Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4114

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4113 and Shewana3_4114 are separated by 82 nucleotidesShewana3_4114 and Shewana3_4115 are separated by 68 nucleotidesShewana3_4115 and Shewana3_4116 are separated by 294 nucleotides Shewana3_4113: Shewana3_4113 - hypothetical protein (RefSeq), at 4,937,337 to 4,937,975 _4113 Shewana3_4114: Shewana3_4114 - hypothetical protein (RefSeq), at 4,938,058 to 4,938,612 _4114 Shewana3_4115: Shewana3_4115 - hypothetical protein (RefSeq), at 4,938,681 to 4,939,148 _4115 Shewana3_4116: Shewana3_4116 - coproporphyrinogen III oxidase (RefSeq), at 4,939,443 to 4,940,783 _4116 Position (kb) 4938 4939Strain fitness (log2 ratio) -1 0 1 2 3 4at 4937.256 kb on - strandat 4937.299 kb on - strandat 4937.352 kb on - strandat 4937.439 kb on - strand, within Shewana3_4113at 4937.644 kb on + strand, within Shewana3_4113at 4937.652 kb on - strand, within Shewana3_4113at 4937.744 kb on + strand, within Shewana3_4113at 4937.901 kb on - strand, within Shewana3_4113at 4938.010 kb on - strandat 4938.237 kb on + strand, within Shewana3_4114at 4938.699 kb on - strandat 4938.760 kb on - strand, within Shewana3_4115at 4938.989 kb on + strand, within Shewana3_4115at 4939.085 kb on + strand, within Shewana3_4115at 4939.231 kb on - strandat 4939.231 kb on - strandat 4939.243 kb on - strandat 4939.405 kb on + strandat 4939.413 kb on - strandat 4939.429 kb on + strandat 4939.429 kb on + strandat 4939.473 kb on + strandat 4939.480 kb on - strandat 4939.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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4,937,256 - -1.6
4,937,299 - -1.3
4,937,352 - +0.7
4,937,439 - Shewana3_4113 0.16 +0.3
4,937,644 + Shewana3_4113 0.48 +0.7
4,937,652 - Shewana3_4113 0.49 +0.7
4,937,744 + Shewana3_4113 0.64 -0.3
4,937,901 - Shewana3_4113 0.88 -1.3
4,938,010 - -1.6
4,938,237 + Shewana3_4114 0.32 -1.2
4,938,699 - +0.3
4,938,760 - Shewana3_4115 0.17 -0.4
4,938,989 + Shewana3_4115 0.66 +0.7
4,939,085 + Shewana3_4115 0.86 +1.3
4,939,231 - +0.5
4,939,231 - +0.9
4,939,243 - +0.7
4,939,405 + +2.6
4,939,413 - +2.2
4,939,429 + +2.1
4,939,429 + +3.3
4,939,473 + +2.1
4,939,480 - +1.9
4,939,488 - +4.0

Or see this region's nucleotide sequence