Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3216

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3214 and Shewana3_3215 are separated by 22 nucleotidesShewana3_3215 and Shewana3_3216 overlap by 4 nucleotidesShewana3_3216 and obgE are separated by 27 nucleotides Shewana3_3214: Shewana3_3214 - dihydrofolate reductase (RefSeq), at 3,858,838 to 3,859,320 _3214 Shewana3_3215: Shewana3_3215 - hypothetical protein (RefSeq), at 3,859,343 to 3,859,816 _3215 Shewana3_3216: Shewana3_3216 - hypothetical protein (RefSeq), at 3,859,813 to 3,860,574 _3216 Shewana3_3217: obgE - GTPase ObgE (RefSeq), at 3,860,602 to 3,861,768 obgE Position (kb) 3859 3860 3861Strain fitness (log2 ratio) -2 -1 0 1at 3858.821 kb on + strandat 3859.467 kb on - strand, within Shewana3_3215at 3859.570 kb on - strand, within Shewana3_3215at 3859.937 kb on - strand, within Shewana3_3216at 3860.205 kb on - strand, within Shewana3_3216at 3860.409 kb on - strand, within Shewana3_3216at 3860.463 kb on - strand, within Shewana3_3216at 3860.539 kb on - strandat 3860.698 kb on - strandat 3860.728 kb on - strand, within obgE

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,858,821 + +0.4
3,859,467 - Shewana3_3215 0.26 +0.5
3,859,570 - Shewana3_3215 0.48 -1.1
3,859,937 - Shewana3_3216 0.16 -1.4
3,860,205 - Shewana3_3216 0.51 -0.9
3,860,409 - Shewana3_3216 0.78 -0.5
3,860,463 - Shewana3_3216 0.85 -0.6
3,860,539 - -1.5
3,860,698 - -2.6
3,860,728 - obgE Shewana3_3217 0.11 -1.9

Or see this region's nucleotide sequence