Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2124

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2123 and Shewana3_2124 are separated by 212 nucleotidesShewana3_2124 and Shewana3_2125 are separated by 125 nucleotidesShewana3_2125 and Shewana3_2126 are separated by 110 nucleotides Shewana3_2123: Shewana3_2123 - hypothetical protein (RefSeq), at 2,548,330 to 2,549,217 _2123 Shewana3_2124: Shewana3_2124 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 2,549,430 to 2,550,440 _2124 Shewana3_2125: Shewana3_2125 - superoxide dismutase, copper/zinc binding (RefSeq), at 2,550,566 to 2,551,078 _2125 Shewana3_2126: Shewana3_2126 - integrase catalytic subunit (RefSeq), at 2,551,189 to 2,551,911 _2126 Position (kb) 2549 2550 2551Strain fitness (log2 ratio) -2 -1 0 1at 2548.790 kb on + strand, within Shewana3_2123at 2548.939 kb on - strand, within Shewana3_2123at 2549.080 kb on + strand, within Shewana3_2123at 2549.080 kb on + strand, within Shewana3_2123at 2549.238 kb on + strandat 2550.904 kb on + strand, within Shewana3_2125at 2551.029 kb on - strandat 2551.145 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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2,548,790 + Shewana3_2123 0.52 -0.3
2,548,939 - Shewana3_2123 0.69 -2.6
2,549,080 + Shewana3_2123 0.84 -1.4
2,549,080 + Shewana3_2123 0.84 +0.4
2,549,238 + -1.8
2,550,904 + Shewana3_2125 0.66 +1.3
2,551,029 - +0.1
2,551,145 - -1.5

Or see this region's nucleotide sequence