Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1637

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1636 and Shewana3_1637 are separated by 9 nucleotidesShewana3_1637 and Shewana3_1638 are separated by 59 nucleotides Shewana3_1636: Shewana3_1636 - SpoVR family protein (RefSeq), at 1,925,698 to 1,927,224 _1636 Shewana3_1637: Shewana3_1637 - hypothetical protein (RefSeq), at 1,927,234 to 1,928,508 _1637 Shewana3_1638: Shewana3_1638 - putative serine protein kinase, PrkA (RefSeq), at 1,928,568 to 1,930,502 _1638 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1926.264 kb on - strand, within Shewana3_1636at 1926.382 kb on - strand, within Shewana3_1636at 1926.719 kb on + strand, within Shewana3_1636at 1926.719 kb on + strand, within Shewana3_1636at 1926.928 kb on - strand, within Shewana3_1636at 1927.068 kb on + strand, within Shewana3_1636at 1927.204 kb on - strandat 1927.490 kb on + strand, within Shewana3_1637at 1927.630 kb on + strand, within Shewana3_1637at 1927.758 kb on - strand, within Shewana3_1637at 1927.853 kb on + strand, within Shewana3_1637at 1928.147 kb on - strand, within Shewana3_1637at 1928.287 kb on - strand, within Shewana3_1637at 1928.319 kb on - strand, within Shewana3_1637at 1928.778 kb on + strand, within Shewana3_1638at 1929.165 kb on + strand, within Shewana3_1638at 1929.320 kb on + strand, within Shewana3_1638at 1929.328 kb on - strand, within Shewana3_1638at 1929.335 kb on - strand, within Shewana3_1638at 1929.358 kb on - strand, within Shewana3_1638at 1929.441 kb on + strand, within Shewana3_1638

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,926,264 - Shewana3_1636 0.37 -0.8
1,926,382 - Shewana3_1636 0.45 -1.3
1,926,719 + Shewana3_1636 0.67 +0.7
1,926,719 + Shewana3_1636 0.67 -3.7
1,926,928 - Shewana3_1636 0.81 +0.5
1,927,068 + Shewana3_1636 0.90 +3.1
1,927,204 - -0.3
1,927,490 + Shewana3_1637 0.20 -0.0
1,927,630 + Shewana3_1637 0.31 +1.0
1,927,758 - Shewana3_1637 0.41 +0.6
1,927,853 + Shewana3_1637 0.49 -2.1
1,928,147 - Shewana3_1637 0.72 -1.8
1,928,287 - Shewana3_1637 0.83 +1.2
1,928,319 - Shewana3_1637 0.85 +0.9
1,928,778 + Shewana3_1638 0.11 -2.8
1,929,165 + Shewana3_1638 0.31 +0.2
1,929,320 + Shewana3_1638 0.39 -1.0
1,929,328 - Shewana3_1638 0.39 -0.1
1,929,335 - Shewana3_1638 0.40 +0.6
1,929,358 - Shewana3_1638 0.41 +1.9
1,929,441 + Shewana3_1638 0.45 +0.9

Or see this region's nucleotide sequence