Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0859

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0858 and Shewana3_0859 are separated by 367 nucleotidesShewana3_0859 and Shewana3_0860 are separated by 53 nucleotides Shewana3_0858: Shewana3_0858 - monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq), at 998,418 to 999,203 _0858 Shewana3_0859: Shewana3_0859 - hypothetical protein (RefSeq), at 999,571 to 1,001,307 _0859 Shewana3_0860: Shewana3_0860 - hypothetical protein (RefSeq), at 1,001,361 to 1,002,908 _0860 Position (kb) 999 1000 1001 1002Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 998.690 kb on + strand, within Shewana3_0858at 998.762 kb on - strand, within Shewana3_0858at 998.818 kb on - strand, within Shewana3_0858at 998.827 kb on + strand, within Shewana3_0858at 998.883 kb on - strand, within Shewana3_0858at 998.883 kb on - strand, within Shewana3_0858at 998.924 kb on + strand, within Shewana3_0858at 998.944 kb on + strand, within Shewana3_0858at 999.072 kb on + strand, within Shewana3_0858at 999.077 kb on + strand, within Shewana3_0858at 999.083 kb on + strandat 999.107 kb on + strand, within Shewana3_0858at 999.107 kb on + strand, within Shewana3_0858at 999.118 kb on + strand, within Shewana3_0858at 999.121 kb on - strand, within Shewana3_0858at 999.121 kb on - strand, within Shewana3_0858at 999.126 kb on - strandat 999.126 kb on - strandat 999.143 kb on - strandat 999.163 kb on + strandat 999.175 kb on + strandat 999.346 kb on - strandat 999.395 kb on - strandat 999.417 kb on + strandat 999.462 kb on + strandat 999.462 kb on + strandat 999.462 kb on + strandat 999.470 kb on - strandat 999.470 kb on - strandat 999.597 kb on + strandat 999.641 kb on + strandat 999.649 kb on - strandat 999.722 kb on - strandat 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.849 kb on + strand, within Shewana3_0859at 999.857 kb on - strand, within Shewana3_0859at 999.857 kb on - strand, within Shewana3_0859at 999.857 kb on - strand, within Shewana3_0859at 999.882 kb on + strand, within Shewana3_0859at 999.891 kb on - strand, within Shewana3_0859at 1000.127 kb on + strand, within Shewana3_0859at 1000.224 kb on - strand, within Shewana3_0859at 1000.350 kb on + strand, within Shewana3_0859at 1000.350 kb on + strand, within Shewana3_0859at 1000.443 kb on + strand, within Shewana3_0859at 1000.783 kb on + strand, within Shewana3_0859at 1000.901 kb on - strand, within Shewana3_0859at 1000.975 kb on + strand, within Shewana3_0859at 1000.975 kb on + strand, within Shewana3_0859at 1001.059 kb on + strand, within Shewana3_0859at 1001.142 kb on + strandat 1001.384 kb on + strandat 1001.385 kb on - strandat 1001.429 kb on + strandat 1001.434 kb on + strandat 1001.438 kb on - strandat 1001.474 kb on - strandat 1001.504 kb on - strandat 1001.574 kb on - strand, within Shewana3_0860at 1001.574 kb on - strand, within Shewana3_0860at 1001.697 kb on - strand, within Shewana3_0860at 1001.874 kb on + strand, within Shewana3_0860at 1001.879 kb on + strand, within Shewana3_0860at 1001.879 kb on + strand, within Shewana3_0860at 1001.931 kb on + strand, within Shewana3_0860at 1002.047 kb on - strand, within Shewana3_0860at 1002.078 kb on - strand, within Shewana3_0860at 1002.096 kb on - strand, within Shewana3_0860at 1002.151 kb on + strand, within Shewana3_0860at 1002.164 kb on - strand, within Shewana3_0860at 1002.225 kb on - strand, within Shewana3_0860

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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998,690 + Shewana3_0858 0.35 -0.9
998,762 - Shewana3_0858 0.44 -0.0
998,818 - Shewana3_0858 0.51 +0.3
998,827 + Shewana3_0858 0.52 -0.1
998,883 - Shewana3_0858 0.59 +0.6
998,883 - Shewana3_0858 0.59 +0.4
998,924 + Shewana3_0858 0.64 -0.5
998,944 + Shewana3_0858 0.67 +1.6
999,072 + Shewana3_0858 0.83 +0.8
999,077 + Shewana3_0858 0.84 +1.1
999,083 + +0.9
999,107 + Shewana3_0858 0.88 +1.2
999,107 + Shewana3_0858 0.88 -0.6
999,118 + Shewana3_0858 0.89 +1.1
999,121 - Shewana3_0858 0.89 -0.3
999,121 - Shewana3_0858 0.89 -0.2
999,126 - -1.3
999,126 - -1.0
999,143 - +0.1
999,163 + +0.5
999,175 + +0.5
999,346 - +1.0
999,395 - +3.1
999,417 + -2.6
999,462 + -0.9
999,462 + +0.3
999,462 + +0.3
999,470 - +0.9
999,470 - -0.7
999,597 + +0.3
999,641 + -0.8
999,649 - +0.1
999,722 - -1.0
999,849 + Shewana3_0859 0.16 +1.0
999,849 + Shewana3_0859 0.16 -0.6
999,849 + Shewana3_0859 0.16 -0.8
999,849 + Shewana3_0859 0.16 -0.4
999,849 + Shewana3_0859 0.16 -0.7
999,849 + Shewana3_0859 0.16 -0.9
999,849 + Shewana3_0859 0.16 +2.5
999,849 + Shewana3_0859 0.16 -0.3
999,849 + Shewana3_0859 0.16 -0.6
999,857 - Shewana3_0859 0.16 +0.2
999,857 - Shewana3_0859 0.16 +0.4
999,857 - Shewana3_0859 0.16 +1.5
999,882 + Shewana3_0859 0.18 -0.4
999,891 - Shewana3_0859 0.18 -1.4
1,000,127 + Shewana3_0859 0.32 -0.8
1,000,224 - Shewana3_0859 0.38 +0.5
1,000,350 + Shewana3_0859 0.45 -1.6
1,000,350 + Shewana3_0859 0.45 -0.4
1,000,443 + Shewana3_0859 0.50 +0.6
1,000,783 + Shewana3_0859 0.70 +0.9
1,000,901 - Shewana3_0859 0.77 -2.5
1,000,975 + Shewana3_0859 0.81 +0.1
1,000,975 + Shewana3_0859 0.81 +0.4
1,001,059 + Shewana3_0859 0.86 +0.9
1,001,142 + +0.1
1,001,384 + +0.6
1,001,385 - +0.0
1,001,429 + +0.3
1,001,434 + -0.6
1,001,438 - -0.2
1,001,474 - -3.1
1,001,504 - -0.7
1,001,574 - Shewana3_0860 0.14 -0.6
1,001,574 - Shewana3_0860 0.14 -0.5
1,001,697 - Shewana3_0860 0.22 +0.5
1,001,874 + Shewana3_0860 0.33 -0.1
1,001,879 + Shewana3_0860 0.33 +1.7
1,001,879 + Shewana3_0860 0.33 +0.6
1,001,931 + Shewana3_0860 0.37 -0.8
1,002,047 - Shewana3_0860 0.44 -0.2
1,002,078 - Shewana3_0860 0.46 -2.4
1,002,096 - Shewana3_0860 0.47 -2.3
1,002,151 + Shewana3_0860 0.51 +3.2
1,002,164 - Shewana3_0860 0.52 -0.6
1,002,225 - Shewana3_0860 0.56 -1.4

Or see this region's nucleotide sequence