Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0775 and Shewana3_0776 are separated by 163 nucleotides Shewana3_0776 and Shewana3_0777 are separated by 174 nucleotides
Shewana3_0775: Shewana3_0775 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 896,881 to 897,729
_0775
Shewana3_0776: Shewana3_0776 - hypothetical protein (RefSeq), at 897,893 to 898,765
_0776
Shewana3_0777: Shewana3_0777 - EAL domain-containing protein (RefSeq), at 898,940 to 900,499
_0777
Position (kb) 897
898
899 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 897.701 kb on + strand at 897.834 kb on + strand at 897.842 kb on - strand at 897.991 kb on - strand, within Shewana3_0776 at 898.059 kb on + strand, within Shewana3_0776 at 898.185 kb on + strand, within Shewana3_0776 at 898.317 kb on + strand, within Shewana3_0776 at 898.317 kb on + strand, within Shewana3_0776 at 898.338 kb on + strand, within Shewana3_0776 at 898.394 kb on - strand, within Shewana3_0776 at 898.475 kb on + strand, within Shewana3_0776 at 898.476 kb on + strand, within Shewana3_0776 at 898.476 kb on + strand, within Shewana3_0776 at 898.507 kb on + strand, within Shewana3_0776 at 898.552 kb on - strand, within Shewana3_0776 at 898.629 kb on - strand, within Shewana3_0776 at 898.666 kb on + strand, within Shewana3_0776 at 899.147 kb on - strand, within Shewana3_0777 at 899.509 kb on - strand, within Shewana3_0777
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 897,701 + +0.3 897,834 + -0.2 897,842 - +0.6 897,991 - Shewana3_0776 0.11 +1.3 898,059 + Shewana3_0776 0.19 +5.9 898,185 + Shewana3_0776 0.33 +1.5 898,317 + Shewana3_0776 0.49 +0.4 898,317 + Shewana3_0776 0.49 +1.4 898,338 + Shewana3_0776 0.51 +0.7 898,394 - Shewana3_0776 0.57 -0.4 898,475 + Shewana3_0776 0.67 +0.7 898,476 + Shewana3_0776 0.67 +2.0 898,476 + Shewana3_0776 0.67 +0.5 898,507 + Shewana3_0776 0.70 -0.8 898,552 - Shewana3_0776 0.75 -0.7 898,629 - Shewana3_0776 0.84 +0.4 898,666 + Shewana3_0776 0.89 -1.6 899,147 - Shewana3_0777 0.13 +0.6 899,509 - Shewana3_0777 0.36 -0.6
Or see this region's nucleotide sequence