Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0697 and Shewana3_0698 are separated by 0 nucleotides Shewana3_0698 and Shewana3_0699 are separated by 69 nucleotides Shewana3_0699 and Shewana3_0700 are separated by 181 nucleotides
Shewana3_0697: Shewana3_0697 - RNAse R (RefSeq), at 812,472 to 814,901
_0697
Shewana3_0698: Shewana3_0698 - 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq), at 814,902 to 815,642
_0698
Shewana3_0699: Shewana3_0699 - major facilitator transporter (RefSeq), at 815,712 to 817,136
_0699
Shewana3_0700: Shewana3_0700 - hypothetical protein (RefSeq), at 817,318 to 818,073
_0700
Position (kb) 815
816
817
818 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 814.814 kb on + strand at 814.960 kb on + strand at 814.989 kb on + strand, within Shewana3_0698 at 815.034 kb on + strand, within Shewana3_0698 at 815.041 kb on - strand, within Shewana3_0698 at 815.076 kb on + strand, within Shewana3_0698 at 815.098 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.508 kb on + strand, within Shewana3_0698 at 815.744 kb on + strand at 815.982 kb on - strand, within Shewana3_0699 at 816.075 kb on - strand, within Shewana3_0699 at 816.109 kb on - strand, within Shewana3_0699 at 816.110 kb on - strand, within Shewana3_0699 at 816.527 kb on + strand, within Shewana3_0699 at 816.617 kb on + strand, within Shewana3_0699 at 816.654 kb on + strand, within Shewana3_0699 at 816.667 kb on - strand, within Shewana3_0699 at 816.685 kb on - strand, within Shewana3_0699 at 816.958 kb on + strand, within Shewana3_0699 at 817.154 kb on + strand at 817.162 kb on - strand at 817.172 kb on - strand at 817.210 kb on - strand at 817.338 kb on + strand at 817.338 kb on + strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.346 kb on - strand at 817.373 kb on - strand at 817.649 kb on + strand, within Shewana3_0700 at 817.763 kb on + strand, within Shewana3_0700 at 817.765 kb on - strand, within Shewana3_0700 at 817.771 kb on - strand, within Shewana3_0700 at 817.773 kb on - strand, within Shewana3_0700 at 817.814 kb on - strand, within Shewana3_0700 at 817.824 kb on - strand, within Shewana3_0700 at 817.902 kb on + strand, within Shewana3_0700 at 817.933 kb on + strand, within Shewana3_0700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 814,814 + -0.4 814,960 + -1.2 814,989 + Shewana3_0698 0.12 -1.0 815,034 + Shewana3_0698 0.18 +1.3 815,041 - Shewana3_0698 0.19 +1.3 815,076 + Shewana3_0698 0.23 +0.0 815,098 + Shewana3_0698 0.26 +0.8 815,508 + Shewana3_0698 0.82 +0.2 815,508 + Shewana3_0698 0.82 +0.6 815,744 + -0.4 815,982 - Shewana3_0699 0.19 +0.5 816,075 - Shewana3_0699 0.25 -0.5 816,109 - Shewana3_0699 0.28 -1.3 816,110 - Shewana3_0699 0.28 -0.0 816,527 + Shewana3_0699 0.57 +0.4 816,617 + Shewana3_0699 0.64 +0.3 816,654 + Shewana3_0699 0.66 -0.6 816,667 - Shewana3_0699 0.67 -0.8 816,685 - Shewana3_0699 0.68 +0.9 816,958 + Shewana3_0699 0.87 +0.0 817,154 + -1.0 817,162 - -0.8 817,172 - -1.3 817,210 - +0.3 817,338 + -0.6 817,338 + +1.4 817,346 - -1.2 817,346 - +0.6 817,346 - +0.1 817,373 - -0.3 817,649 + Shewana3_0700 0.44 +0.7 817,763 + Shewana3_0700 0.59 -0.9 817,765 - Shewana3_0700 0.59 -1.5 817,771 - Shewana3_0700 0.60 -2.3 817,773 - Shewana3_0700 0.60 +0.3 817,814 - Shewana3_0700 0.66 -2.8 817,824 - Shewana3_0700 0.67 +0.4 817,902 + Shewana3_0700 0.77 -0.7 817,933 + Shewana3_0700 0.81 -1.3
Or see this region's nucleotide sequence