Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0661 and Shewana3_0662 are separated by 159 nucleotides Shewana3_0662 and Shewana3_0663 are separated by 270 nucleotides Shewana3_0663 and Shewana3_0664 are separated by 725 nucleotides
Shewana3_0661: Shewana3_0661 - hypothetical protein (RefSeq), at 782,844 to 783,428
_0661
Shewana3_0662: Shewana3_0662 - hypothetical protein (RefSeq), at 783,588 to 783,935
_0662
Shewana3_0663: Shewana3_0663 - protein of unknown function RIO1 (RefSeq), at 784,206 to 785,063
_0663
Shewana3_0664: Shewana3_0664 - transposase IS3/IS911 family protein (RefSeq), at 785,789 to 786,022
_0664
Position (kb) 784
785
786 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 783.340 kb on - strand, within Shewana3_0661 at 783.352 kb on - strand, within Shewana3_0661 at 783.385 kb on - strand at 783.534 kb on + strand at 783.814 kb on - strand, within Shewana3_0662 at 783.921 kb on - strand at 783.944 kb on + strand at 784.183 kb on - strand at 784.192 kb on + strand at 784.200 kb on - strand at 784.260 kb on + strand at 784.297 kb on - strand, within Shewana3_0663 at 784.344 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.371 kb on - strand, within Shewana3_0663 at 784.425 kb on - strand, within Shewana3_0663 at 784.533 kb on - strand, within Shewana3_0663 at 784.604 kb on - strand, within Shewana3_0663 at 784.677 kb on + strand, within Shewana3_0663 at 784.677 kb on + strand, within Shewana3_0663 at 784.692 kb on + strand, within Shewana3_0663 at 784.692 kb on + strand, within Shewana3_0663 at 784.772 kb on - strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.785 kb on + strand, within Shewana3_0663 at 784.855 kb on + strand, within Shewana3_0663 at 784.956 kb on + strand, within Shewana3_0663 at 785.162 kb on - strand at 785.255 kb on - strand at 785.343 kb on + strand at 785.343 kb on + strand at 785.351 kb on - strand at 785.401 kb on + strand at 785.623 kb on + strand at 785.638 kb on - strand at 785.721 kb on + strand at 785.742 kb on - strand at 785.787 kb on + strand at 785.801 kb on + strand at 785.821 kb on + strand, within Shewana3_0664 at 786.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 783,340 - Shewana3_0661 0.85 -1.3 783,352 - Shewana3_0661 0.87 +0.5 783,385 - +1.0 783,534 + -0.8 783,814 - Shewana3_0662 0.65 -0.1 783,921 - -1.5 783,944 + +2.7 784,183 - -0.1 784,192 + -0.7 784,200 - +0.8 784,260 + +0.7 784,297 - Shewana3_0663 0.11 -0.4 784,344 - Shewana3_0663 0.16 -0.3 784,371 - Shewana3_0663 0.19 +0.2 784,371 - Shewana3_0663 0.19 +1.0 784,425 - Shewana3_0663 0.26 -0.2 784,533 - Shewana3_0663 0.38 +0.2 784,604 - Shewana3_0663 0.46 +0.3 784,677 + Shewana3_0663 0.55 +0.7 784,677 + Shewana3_0663 0.55 +1.3 784,692 + Shewana3_0663 0.57 +0.3 784,692 + Shewana3_0663 0.57 +1.3 784,772 - Shewana3_0663 0.66 +1.3 784,785 + Shewana3_0663 0.67 +1.1 784,785 + Shewana3_0663 0.67 -0.4 784,785 + Shewana3_0663 0.67 +2.9 784,855 + Shewana3_0663 0.76 -0.7 784,956 + Shewana3_0663 0.87 +0.8 785,162 - -0.7 785,255 - +2.2 785,343 + +1.4 785,343 + +0.8 785,351 - +0.5 785,401 + +1.5 785,623 + -2.5 785,638 - +2.9 785,721 + -0.6 785,742 - +2.6 785,787 + +0.2 785,801 + +1.2 785,821 + Shewana3_0664 0.14 +1.4 786,038 + +1.1
Or see this region's nucleotide sequence