Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0578 and Shewana3_0579 are separated by 247 nucleotides Shewana3_0579 and Shewana3_0580 are separated by 107 nucleotides Shewana3_0580 and Shewana3_0581 are separated by 199 nucleotides Shewana3_0581 and Shewana3_0582 are separated by 248 nucleotides
Shewana3_0578: Shewana3_0578 - serine/threonine protein kinase (RefSeq), at 678,090 to 679,898
_0578
Shewana3_0579: Shewana3_0579 - hypothetical protein (RefSeq), at 680,146 to 680,484
_0579
Shewana3_0580: Shewana3_0580 - thiopurine S-methyltransferase (RefSeq), at 680,592 to 681,248
_0580
Shewana3_0581: Shewana3_0581 - BFD/(2Fe-2S)-binding domain-containing protein (RefSeq), at 681,448 to 681,639
_0581
Shewana3_0582: Shewana3_0582 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 681,888 to 683,462
_0582
Position (kb) 680
681
682 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 679.597 kb on + strand, within Shewana3_0578 at 679.597 kb on + strand, within Shewana3_0578 at 679.599 kb on + strand, within Shewana3_0578 at 679.607 kb on - strand, within Shewana3_0578 at 679.612 kb on + strand, within Shewana3_0578 at 680.138 kb on - strand at 680.268 kb on + strand, within Shewana3_0579 at 680.280 kb on + strand, within Shewana3_0579 at 680.473 kb on + strand at 680.481 kb on - strand at 680.502 kb on - strand at 680.909 kb on - strand, within Shewana3_0580 at 680.939 kb on + strand, within Shewana3_0580 at 680.947 kb on - strand, within Shewana3_0580 at 681.035 kb on - strand, within Shewana3_0580 at 681.575 kb on - strand, within Shewana3_0581 at 682.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 679,597 + Shewana3_0578 0.83 -2.1 679,597 + Shewana3_0578 0.83 +1.6 679,599 + Shewana3_0578 0.83 -3.6 679,607 - Shewana3_0578 0.84 -1.0 679,612 + Shewana3_0578 0.84 -3.1 680,138 - -1.3 680,268 + Shewana3_0579 0.36 +1.5 680,280 + Shewana3_0579 0.40 +0.2 680,473 + +0.4 680,481 - -3.0 680,502 - +0.4 680,909 - Shewana3_0580 0.48 -0.0 680,939 + Shewana3_0580 0.53 +2.7 680,947 - Shewana3_0580 0.54 +0.3 681,035 - Shewana3_0580 0.67 +1.0 681,575 - Shewana3_0581 0.66 -0.4 682,030 + -0.4
Or see this region's nucleotide sequence