Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0518

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0517 and Shewana3_0518 are separated by 77 nucleotidesShewana3_0518 and Shewana3_0519 are separated by 129 nucleotidesShewana3_0519 and mscL are separated by 82 nucleotides Shewana3_0517: Shewana3_0517 - RND family efflux transporter MFP subunit (RefSeq), at 606,137 to 607,417 _0517 Shewana3_0518: Shewana3_0518 - CzcA family heavy metal efflux protein (RefSeq), at 607,495 to 610,707 _0518 Shewana3_0519: Shewana3_0519 - antibiotic biosynthesis monooxygenase (RefSeq), at 610,837 to 611,160 _0519 Shewana3_0520: mscL - large-conductance mechanosensitive channel (RefSeq), at 611,243 to 611,653 mscL Position (kb) 607 608 609 610 611Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 606.661 kb on + strand, within Shewana3_0517at 606.727 kb on - strand, within Shewana3_0517at 606.884 kb on + strand, within Shewana3_0517at 606.913 kb on + strand, within Shewana3_0517at 607.031 kb on + strand, within Shewana3_0517at 607.075 kb on + strand, within Shewana3_0517at 607.101 kb on - strand, within Shewana3_0517at 607.144 kb on - strand, within Shewana3_0517at 607.277 kb on - strand, within Shewana3_0517at 607.332 kb on - strandat 607.384 kb on + strandat 607.384 kb on + strandat 607.392 kb on - strandat 607.392 kb on - strandat 607.392 kb on - strandat 607.392 kb on - strandat 607.640 kb on + strandat 607.659 kb on - strandat 607.711 kb on + strandat 607.745 kb on + strandat 607.783 kb on - strandat 607.865 kb on + strand, within Shewana3_0518at 607.895 kb on + strand, within Shewana3_0518at 608.001 kb on + strand, within Shewana3_0518at 608.091 kb on + strand, within Shewana3_0518at 608.230 kb on - strand, within Shewana3_0518at 608.268 kb on + strand, within Shewana3_0518at 608.291 kb on + strand, within Shewana3_0518at 608.301 kb on + strand, within Shewana3_0518at 608.481 kb on + strand, within Shewana3_0518at 608.481 kb on + strand, within Shewana3_0518at 608.481 kb on + strand, within Shewana3_0518at 608.489 kb on - strand, within Shewana3_0518at 608.489 kb on - strand, within Shewana3_0518at 608.489 kb on - strand, within Shewana3_0518at 608.489 kb on - strand, within Shewana3_0518at 608.489 kb on - strand, within Shewana3_0518at 608.489 kb on - strand, within Shewana3_0518at 608.543 kb on - strand, within Shewana3_0518at 608.562 kb on + strand, within Shewana3_0518at 608.637 kb on + strand, within Shewana3_0518at 608.637 kb on + strand, within Shewana3_0518at 608.640 kb on + strand, within Shewana3_0518at 608.670 kb on + strand, within Shewana3_0518at 608.728 kb on - strand, within Shewana3_0518at 608.753 kb on + strand, within Shewana3_0518at 608.868 kb on + strand, within Shewana3_0518at 608.885 kb on + strand, within Shewana3_0518at 608.901 kb on + strand, within Shewana3_0518at 609.024 kb on + strand, within Shewana3_0518at 609.157 kb on + strand, within Shewana3_0518at 609.165 kb on - strand, within Shewana3_0518at 609.196 kb on - strand, within Shewana3_0518at 609.211 kb on - strand, within Shewana3_0518at 609.229 kb on + strand, within Shewana3_0518at 609.290 kb on + strand, within Shewana3_0518at 609.290 kb on + strand, within Shewana3_0518at 609.390 kb on + strand, within Shewana3_0518at 609.457 kb on - strand, within Shewana3_0518at 609.629 kb on + strand, within Shewana3_0518at 609.761 kb on - strand, within Shewana3_0518at 609.928 kb on + strand, within Shewana3_0518at 609.938 kb on + strand, within Shewana3_0518at 610.010 kb on + strand, within Shewana3_0518at 610.054 kb on + strand, within Shewana3_0518at 610.062 kb on - strand, within Shewana3_0518at 610.085 kb on - strand, within Shewana3_0518at 610.163 kb on + strand, within Shewana3_0518at 610.233 kb on - strand, within Shewana3_0518at 610.268 kb on + strand, within Shewana3_0518at 610.439 kb on + strandat 610.528 kb on + strandat 610.528 kb on + strandat 610.528 kb on + strandat 610.560 kb on - strandat 610.568 kb on + strandat 610.574 kb on - strandat 610.632 kb on - strandat 610.639 kb on + strandat 610.647 kb on - strandat 610.710 kb on - strandat 610.710 kb on - strandat 610.710 kb on - strandat 610.743 kb on + strandat 610.930 kb on + strand, within Shewana3_0519at 610.984 kb on + strand, within Shewana3_0519at 611.031 kb on - strand, within Shewana3_0519at 611.119 kb on + strand, within Shewana3_0519at 611.127 kb on - strand, within Shewana3_0519at 611.140 kb on + strandat 611.267 kb on - strandat 611.267 kb on - strandat 611.267 kb on - strandat 611.464 kb on - strand, within mscLat 611.512 kb on - strand, within mscLat 611.557 kb on - strand, within mscLat 611.557 kb on - strand, within mscLat 611.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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606,661 + Shewana3_0517 0.41 +0.5
606,727 - Shewana3_0517 0.46 -0.9
606,884 + Shewana3_0517 0.58 -0.6
606,913 + Shewana3_0517 0.61 -0.6
607,031 + Shewana3_0517 0.70 +1.8
607,075 + Shewana3_0517 0.73 +1.6
607,101 - Shewana3_0517 0.75 -3.8
607,144 - Shewana3_0517 0.79 +0.6
607,277 - Shewana3_0517 0.89 -1.6
607,332 - -0.5
607,384 + -2.3
607,384 + +0.6
607,392 - +0.0
607,392 - +1.0
607,392 - -0.5
607,392 - -1.2
607,640 + -0.4
607,659 - -0.8
607,711 + +0.2
607,745 + +0.8
607,783 - -1.0
607,865 + Shewana3_0518 0.12 +1.4
607,895 + Shewana3_0518 0.12 -2.8
608,001 + Shewana3_0518 0.16 -0.5
608,091 + Shewana3_0518 0.19 +0.3
608,230 - Shewana3_0518 0.23 -1.3
608,268 + Shewana3_0518 0.24 +0.3
608,291 + Shewana3_0518 0.25 -3.1
608,301 + Shewana3_0518 0.25 -0.3
608,481 + Shewana3_0518 0.31 +0.1
608,481 + Shewana3_0518 0.31 +0.3
608,481 + Shewana3_0518 0.31 +0.6
608,489 - Shewana3_0518 0.31 +0.3
608,489 - Shewana3_0518 0.31 -1.7
608,489 - Shewana3_0518 0.31 -1.8
608,489 - Shewana3_0518 0.31 -0.1
608,489 - Shewana3_0518 0.31 +0.5
608,489 - Shewana3_0518 0.31 +1.0
608,543 - Shewana3_0518 0.33 -0.8
608,562 + Shewana3_0518 0.33 -0.5
608,637 + Shewana3_0518 0.36 -0.8
608,637 + Shewana3_0518 0.36 -0.5
608,640 + Shewana3_0518 0.36 -1.5
608,670 + Shewana3_0518 0.37 +0.8
608,728 - Shewana3_0518 0.38 -0.2
608,753 + Shewana3_0518 0.39 -0.4
608,868 + Shewana3_0518 0.43 +0.6
608,885 + Shewana3_0518 0.43 -0.2
608,901 + Shewana3_0518 0.44 +0.0
609,024 + Shewana3_0518 0.48 -0.4
609,157 + Shewana3_0518 0.52 -0.1
609,165 - Shewana3_0518 0.52 +0.0
609,196 - Shewana3_0518 0.53 -0.7
609,211 - Shewana3_0518 0.53 +0.2
609,229 + Shewana3_0518 0.54 -1.3
609,290 + Shewana3_0518 0.56 -0.0
609,290 + Shewana3_0518 0.56 +0.6
609,390 + Shewana3_0518 0.59 -2.1
609,457 - Shewana3_0518 0.61 -0.7
609,629 + Shewana3_0518 0.66 +0.4
609,761 - Shewana3_0518 0.71 -2.0
609,928 + Shewana3_0518 0.76 -0.1
609,938 + Shewana3_0518 0.76 +0.0
610,010 + Shewana3_0518 0.78 +1.1
610,054 + Shewana3_0518 0.80 -0.2
610,062 - Shewana3_0518 0.80 -0.9
610,085 - Shewana3_0518 0.81 +0.2
610,163 + Shewana3_0518 0.83 +0.6
610,233 - Shewana3_0518 0.85 -0.3
610,268 + Shewana3_0518 0.86 -0.5
610,439 + +2.3
610,528 + +0.6
610,528 + +0.3
610,528 + -2.0
610,560 - -0.8
610,568 + +3.2
610,574 - +0.6
610,632 - +4.1
610,639 + +0.3
610,647 - +1.9
610,710 - +0.3
610,710 - -0.6
610,710 - +0.5
610,743 + -0.1
610,930 + Shewana3_0519 0.29 +0.7
610,984 + Shewana3_0519 0.45 -0.7
611,031 - Shewana3_0519 0.60 -0.3
611,119 + Shewana3_0519 0.87 +0.3
611,127 - Shewana3_0519 0.90 -0.2
611,140 + -0.2
611,267 - +0.2
611,267 - -0.6
611,267 - +0.4
611,464 - mscL Shewana3_0520 0.54 -0.4
611,512 - mscL Shewana3_0520 0.65 +0.2
611,557 - mscL Shewana3_0520 0.76 +0.7
611,557 - mscL Shewana3_0520 0.76 +1.8
611,636 - +1.9

Or see this region's nucleotide sequence