Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0491 and Shewana3_0492 are separated by 64 nucleotides Shewana3_0492 and Shewana3_0493 are separated by 86 nucleotides Shewana3_0493 and Shewana3_0494 are separated by 2 nucleotides
Shewana3_0491: Shewana3_0491 - FKBP-type peptidyl-prolyl isomerase domain-containing protein (RefSeq), at 574,617 to 575,396
_0491
Shewana3_0492: Shewana3_0492 - formate-dependent nitrite reductase, NrfG protein (RefSeq), at 575,461 to 576,135
_0492
Shewana3_0493: Shewana3_0493 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 576,222 to 576,929
_0493
Shewana3_0494: Shewana3_0494 - polysulphide reductase, NrfD (RefSeq), at 576,932 to 577,879
_0494
Position (kb) 576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 575.265 kb on + strand, within Shewana3_0491 at 575.397 kb on + strand at 575.397 kb on + strand at 575.409 kb on + strand at 575.441 kb on + strand at 575.449 kb on - strand at 575.486 kb on - strand at 575.541 kb on - strand, within Shewana3_0492 at 575.584 kb on - strand, within Shewana3_0492 at 575.590 kb on + strand, within Shewana3_0492 at 575.592 kb on + strand, within Shewana3_0492 at 575.825 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.860 kb on - strand, within Shewana3_0492 at 575.890 kb on - strand, within Shewana3_0492 at 576.084 kb on + strand at 576.092 kb on - strand at 576.274 kb on - strand at 576.476 kb on + strand, within Shewana3_0493 at 576.509 kb on - strand, within Shewana3_0493 at 576.816 kb on + strand, within Shewana3_0493 at 576.824 kb on - strand, within Shewana3_0493 at 576.824 kb on - strand, within Shewana3_0493 at 576.893 kb on - strand at 577.039 kb on - strand, within Shewana3_0494 at 577.128 kb on + strand, within Shewana3_0494 at 577.393 kb on + strand, within Shewana3_0494 at 577.549 kb on - strand, within Shewana3_0494 at 577.559 kb on - strand, within Shewana3_0494 at 577.884 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 575,265 + Shewana3_0491 0.83 -0.4 575,397 + +1.5 575,397 + +0.4 575,409 + -2.3 575,441 + +0.9 575,449 - +0.1 575,486 - +1.6 575,541 - Shewana3_0492 0.12 -0.4 575,584 - Shewana3_0492 0.18 +1.5 575,590 + Shewana3_0492 0.19 -1.0 575,592 + Shewana3_0492 0.19 +0.4 575,825 - Shewana3_0492 0.54 +0.4 575,860 - Shewana3_0492 0.59 -1.0 575,860 - Shewana3_0492 0.59 -0.4 575,890 - Shewana3_0492 0.64 -1.6 576,084 + +0.8 576,092 - +0.4 576,274 - +0.0 576,476 + Shewana3_0493 0.36 -1.4 576,509 - Shewana3_0493 0.41 +1.9 576,816 + Shewana3_0493 0.84 +1.2 576,824 - Shewana3_0493 0.85 +0.6 576,824 - Shewana3_0493 0.85 -0.6 576,893 - -3.7 577,039 - Shewana3_0494 0.11 +0.3 577,128 + Shewana3_0494 0.21 -0.0 577,393 + Shewana3_0494 0.49 -1.8 577,549 - Shewana3_0494 0.65 -0.3 577,559 - Shewana3_0494 0.66 -1.8 577,884 + +2.8
Or see this region's nucleotide sequence