Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0476 and Shewana3_0477 are separated by 215 nucleotides Shewana3_0477 and Shewana3_0478 overlap by 4 nucleotides Shewana3_0478 and Shewana3_0479 are separated by 66 nucleotides
Shewana3_0476: Shewana3_0476 - redoxin domain-containing protein (RefSeq), at 553,569 to 554,489
_0476
Shewana3_0477: Shewana3_0477 - hypothetical protein (RefSeq), at 554,705 to 555,811
_0477
Shewana3_0478: Shewana3_0478 - putative mitomycin resistance protein (RefSeq), at 555,808 to 556,098
_0478
Shewana3_0479: Shewana3_0479 - response regulator receiver modulated metal dependent phosphohydrolase (RefSeq), at 556,165 to 557,217
_0479
Position (kb) 554
555
556 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 553.855 kb on - strand, within Shewana3_0476 at 553.911 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.926 kb on + strand, within Shewana3_0476 at 553.934 kb on - strand, within Shewana3_0476 at 553.954 kb on - strand, within Shewana3_0476 at 553.983 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.315 kb on + strand, within Shewana3_0476 at 554.323 kb on - strand, within Shewana3_0476 at 554.437 kb on - strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.471 kb on + strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.479 kb on - strand at 554.554 kb on - strand at 554.607 kb on - strand at 554.612 kb on - strand at 554.989 kb on + strand, within Shewana3_0477 at 555.087 kb on - strand, within Shewana3_0477 at 555.283 kb on + strand, within Shewana3_0477 at 555.312 kb on + strand, within Shewana3_0477 at 555.410 kb on - strand, within Shewana3_0477 at 555.510 kb on - strand, within Shewana3_0477 at 555.568 kb on + strand, within Shewana3_0477 at 555.585 kb on + strand, within Shewana3_0477 at 555.756 kb on - strand at 555.783 kb on + strand at 555.790 kb on + strand at 555.806 kb on + strand at 555.806 kb on + strand at 555.857 kb on + strand, within Shewana3_0478 at 556.131 kb on + strand at 556.330 kb on - strand, within Shewana3_0479 at 556.335 kb on + strand, within Shewana3_0479 at 556.422 kb on + strand, within Shewana3_0479 at 556.801 kb on - strand, within Shewana3_0479 at 556.803 kb on + strand, within Shewana3_0479
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 553,855 - Shewana3_0476 0.31 -0.7 553,911 + Shewana3_0476 0.37 +0.8 553,926 + Shewana3_0476 0.39 +2.1 553,926 + Shewana3_0476 0.39 +1.7 553,934 - Shewana3_0476 0.40 -3.1 553,954 - Shewana3_0476 0.42 +0.4 553,983 + Shewana3_0476 0.45 +1.2 554,315 + Shewana3_0476 0.81 -2.6 554,315 + Shewana3_0476 0.81 +0.1 554,315 + Shewana3_0476 0.81 -0.5 554,323 - Shewana3_0476 0.82 +0.4 554,437 - +0.4 554,471 + -3.4 554,471 + +0.2 554,471 + -1.0 554,471 + +1.2 554,471 + -0.9 554,471 + +0.5 554,471 + +1.1 554,471 + -2.1 554,471 + +2.3 554,471 + +1.9 554,471 + +0.6 554,471 + +0.8 554,471 + +0.2 554,471 + -0.6 554,471 + -2.4 554,471 + -1.5 554,479 - +0.1 554,479 - +0.5 554,479 - +1.5 554,479 - +0.7 554,479 - -0.9 554,479 - +0.4 554,479 - +1.0 554,479 - +0.5 554,554 - +0.0 554,607 - +1.9 554,612 - +1.6 554,989 + Shewana3_0477 0.26 +1.4 555,087 - Shewana3_0477 0.35 -1.6 555,283 + Shewana3_0477 0.52 -3.6 555,312 + Shewana3_0477 0.55 -2.6 555,410 - Shewana3_0477 0.64 -3.3 555,510 - Shewana3_0477 0.73 +0.2 555,568 + Shewana3_0477 0.78 -0.4 555,585 + Shewana3_0477 0.79 -0.8 555,756 - -0.2 555,783 + +1.6 555,790 + -0.2 555,806 + +0.2 555,806 + +0.0 555,857 + Shewana3_0478 0.17 +0.4 556,131 + -0.4 556,330 - Shewana3_0479 0.16 +0.7 556,335 + Shewana3_0479 0.16 +0.5 556,422 + Shewana3_0479 0.24 +0.4 556,801 - Shewana3_0479 0.60 +0.2 556,803 + Shewana3_0479 0.61 +3.5
Or see this region's nucleotide sequence