Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0452 and Shewana3_0453 are separated by 189 nucleotides Shewana3_0453 and Shewana3_0454 are separated by 164 nucleotides Shewana3_0454 and Shewana3_0455 are separated by 49 nucleotides Shewana3_0455 and Shewana3_0456 are separated by 33 nucleotides
Shewana3_0452: Shewana3_0452 - thioredoxin (RefSeq), at 527,814 to 528,236
_0452
Shewana3_0453: Shewana3_0453 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 528,426 to 528,761
_0453
Shewana3_0454: Shewana3_0454 - diguanylate cyclase with PAS/PAC sensor (RefSeq), at 528,926 to 529,912
_0454
Shewana3_0455: Shewana3_0455 - hypothetical protein (RefSeq), at 529,962 to 530,360
_0455
Shewana3_0456: Shewana3_0456 - TRAP transporter, 4TM/12TM fusion protein (RefSeq), at 530,394 to 532,427
_0456
Position (kb) 528
529
530 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 527.967 kb on - strand, within Shewana3_0452 at 528.209 kb on - strand at 528.311 kb on + strand at 528.311 kb on + strand at 528.311 kb on + strand at 528.319 kb on - strand at 528.319 kb on - strand at 528.541 kb on - strand, within Shewana3_0453 at 528.663 kb on + strand, within Shewana3_0453 at 528.717 kb on - strand, within Shewana3_0453 at 528.787 kb on + strand at 528.787 kb on + strand at 528.818 kb on - strand at 528.887 kb on - strand at 529.103 kb on - strand, within Shewana3_0454 at 529.103 kb on - strand, within Shewana3_0454 at 529.105 kb on + strand, within Shewana3_0454 at 529.113 kb on - strand, within Shewana3_0454 at 529.113 kb on - strand, within Shewana3_0454 at 529.195 kb on + strand, within Shewana3_0454 at 529.450 kb on + strand, within Shewana3_0454 at 529.505 kb on + strand, within Shewana3_0454 at 529.632 kb on - strand, within Shewana3_0454 at 529.639 kb on + strand, within Shewana3_0454 at 529.688 kb on + strand, within Shewana3_0454 at 529.693 kb on + strand, within Shewana3_0454 at 529.711 kb on - strand, within Shewana3_0454 at 530.020 kb on - strand, within Shewana3_0455 at 530.050 kb on + strand, within Shewana3_0455 at 530.056 kb on - strand, within Shewana3_0455 at 530.058 kb on - strand, within Shewana3_0455 at 530.058 kb on - strand, within Shewana3_0455 at 530.058 kb on - strand, within Shewana3_0455 at 530.072 kb on + strand, within Shewana3_0455 at 530.298 kb on + strand, within Shewana3_0455 at 530.315 kb on + strand, within Shewana3_0455 at 530.316 kb on - strand, within Shewana3_0455 at 530.329 kb on + strand at 530.329 kb on + strand at 530.392 kb on - strand at 530.392 kb on - strand at 530.400 kb on - strand at 530.403 kb on - strand at 530.413 kb on - strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.429 kb on + strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.437 kb on - strand at 530.462 kb on - strand at 530.492 kb on + strand at 530.693 kb on - strand, within Shewana3_0456 at 530.720 kb on + strand, within Shewana3_0456 at 530.775 kb on + strand, within Shewana3_0456 at 530.775 kb on + strand, within Shewana3_0456
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 527,967 - Shewana3_0452 0.36 +2.3 528,209 - -0.1 528,311 + -0.7 528,311 + +0.1 528,311 + -0.7 528,319 - -1.1 528,319 - -0.5 528,541 - Shewana3_0453 0.34 +0.6 528,663 + Shewana3_0453 0.71 +2.2 528,717 - Shewana3_0453 0.87 +0.7 528,787 + -0.1 528,787 + +1.9 528,818 - +0.3 528,887 - -0.5 529,103 - Shewana3_0454 0.18 -0.7 529,103 - Shewana3_0454 0.18 -2.0 529,105 + Shewana3_0454 0.18 -0.3 529,113 - Shewana3_0454 0.19 +0.4 529,113 - Shewana3_0454 0.19 -2.7 529,195 + Shewana3_0454 0.27 -1.7 529,450 + Shewana3_0454 0.53 +0.4 529,505 + Shewana3_0454 0.59 +0.3 529,632 - Shewana3_0454 0.72 -0.7 529,639 + Shewana3_0454 0.72 -2.4 529,688 + Shewana3_0454 0.77 -0.9 529,693 + Shewana3_0454 0.78 +0.3 529,711 - Shewana3_0454 0.80 +2.3 530,020 - Shewana3_0455 0.15 +0.8 530,050 + Shewana3_0455 0.22 -4.9 530,056 - Shewana3_0455 0.24 +1.1 530,058 - Shewana3_0455 0.24 +0.3 530,058 - Shewana3_0455 0.24 +0.0 530,058 - Shewana3_0455 0.24 +0.5 530,072 + Shewana3_0455 0.28 -0.8 530,298 + Shewana3_0455 0.84 -2.0 530,315 + Shewana3_0455 0.88 -0.8 530,316 - Shewana3_0455 0.89 -0.4 530,329 + -0.1 530,329 + +1.3 530,392 - -0.0 530,392 - -1.1 530,400 - +0.8 530,403 - -6.6 530,413 - +0.3 530,429 + -0.9 530,429 + +1.8 530,429 + +0.1 530,429 + +0.3 530,429 + -1.2 530,429 + +0.6 530,429 + +0.6 530,429 + +0.3 530,429 + -1.9 530,437 - -0.2 530,437 - -1.2 530,437 - -1.2 530,437 - -0.0 530,437 - +2.2 530,437 - -0.7 530,437 - -0.7 530,437 - -1.4 530,437 - +0.9 530,437 - +2.2 530,437 - +0.5 530,437 - +3.7 530,462 - +0.3 530,492 + -0.5 530,693 - Shewana3_0456 0.15 -0.2 530,720 + Shewana3_0456 0.16 -0.4 530,775 + Shewana3_0456 0.19 -0.3 530,775 + Shewana3_0456 0.19 +0.2
Or see this region's nucleotide sequence