Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0382 and Shewana3_0383 are separated by 358 nucleotides Shewana3_0383 and Shewana3_0384 overlap by 4 nucleotides
Shewana3_0382: Shewana3_0382 - putative outer membrane adhesin like proteiin (RefSeq), at 425,414 to 442,933
_0382
Shewana3_0383: Shewana3_0383 - HemY domain-containing protein (RefSeq), at 443,292 to 444,458
_0383
Shewana3_0384: Shewana3_0384 - protein of unknown function DUF513, hemX (RefSeq), at 444,455 to 445,696
_0384
Position (kb) 443
444
445 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 442.390 kb on - strand at 442.393 kb on + strand at 442.444 kb on - strand at 442.445 kb on - strand at 442.595 kb on + strand at 442.622 kb on + strand at 442.703 kb on - strand at 442.723 kb on - strand at 442.734 kb on - strand at 442.784 kb on - strand at 443.179 kb on - strand at 443.248 kb on - strand at 443.290 kb on + strand at 443.490 kb on - strand, within Shewana3_0383 at 443.681 kb on + strand, within Shewana3_0383 at 443.717 kb on + strand, within Shewana3_0383 at 443.725 kb on - strand, within Shewana3_0383 at 443.749 kb on + strand, within Shewana3_0383 at 443.757 kb on - strand, within Shewana3_0383 at 443.840 kb on + strand, within Shewana3_0383 at 443.879 kb on - strand, within Shewana3_0383 at 444.130 kb on + strand, within Shewana3_0383 at 444.289 kb on + strand, within Shewana3_0383 at 444.333 kb on + strand, within Shewana3_0383 at 444.604 kb on - strand, within Shewana3_0384 at 444.605 kb on + strand, within Shewana3_0384 at 444.613 kb on - strand, within Shewana3_0384 at 444.755 kb on + strand, within Shewana3_0384 at 444.768 kb on - strand, within Shewana3_0384 at 444.769 kb on - strand, within Shewana3_0384 at 444.785 kb on - strand, within Shewana3_0384 at 444.913 kb on - strand, within Shewana3_0384 at 444.957 kb on - strand, within Shewana3_0384 at 445.084 kb on + strand, within Shewana3_0384 at 445.179 kb on + strand, within Shewana3_0384 at 445.200 kb on - strand, within Shewana3_0384 at 445.214 kb on + strand, within Shewana3_0384 at 445.315 kb on - strand, within Shewana3_0384 at 445.439 kb on - strand, within Shewana3_0384
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 442,390 - -0.5 442,393 + -0.7 442,444 - -1.0 442,445 - -0.2 442,595 + -0.7 442,622 + -0.3 442,703 - -1.5 442,723 - +0.9 442,734 - -1.3 442,784 - +2.2 443,179 - -1.0 443,248 - -0.9 443,290 + +2.0 443,490 - Shewana3_0383 0.17 -0.6 443,681 + Shewana3_0383 0.33 +0.8 443,717 + Shewana3_0383 0.36 -1.1 443,725 - Shewana3_0383 0.37 +1.3 443,749 + Shewana3_0383 0.39 +0.9 443,757 - Shewana3_0383 0.40 -1.6 443,840 + Shewana3_0383 0.47 +1.6 443,879 - Shewana3_0383 0.50 -0.5 444,130 + Shewana3_0383 0.72 +1.1 444,289 + Shewana3_0383 0.85 +0.3 444,333 + Shewana3_0383 0.89 +1.5 444,604 - Shewana3_0384 0.12 -0.4 444,605 + Shewana3_0384 0.12 +3.4 444,613 - Shewana3_0384 0.13 -2.0 444,755 + Shewana3_0384 0.24 +0.1 444,768 - Shewana3_0384 0.25 +0.7 444,769 - Shewana3_0384 0.25 +0.3 444,785 - Shewana3_0384 0.27 +2.9 444,913 - Shewana3_0384 0.37 +0.1 444,957 - Shewana3_0384 0.40 -0.3 445,084 + Shewana3_0384 0.51 -0.8 445,179 + Shewana3_0384 0.58 -0.0 445,200 - Shewana3_0384 0.60 +1.1 445,214 + Shewana3_0384 0.61 +0.3 445,315 - Shewana3_0384 0.69 +0.2 445,439 - Shewana3_0384 0.79 +1.5
Or see this region's nucleotide sequence