Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0379 and Shewana3_0380 are separated by 26 nucleotides Shewana3_0380 and Shewana3_0381 overlap by 4 nucleotides
Shewana3_0379: Shewana3_0379 - TolC family type I secretion outer membrane protein (RefSeq), at 420,327 to 421,742
_0379
Shewana3_0380: Shewana3_0380 - HlyD family type I secretion membrane fusion protein (RefSeq), at 421,769 to 423,151
_0380
Shewana3_0381: Shewana3_0381 - ABC transporter related (RefSeq), at 423,148 to 425,325
_0381
Position (kb) 421
422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 421.273 kb on + strand, within Shewana3_0379 at 421.281 kb on - strand, within Shewana3_0379 at 421.302 kb on + strand, within Shewana3_0379 at 421.331 kb on + strand, within Shewana3_0379 at 421.492 kb on + strand, within Shewana3_0379 at 421.579 kb on + strand, within Shewana3_0379 at 421.711 kb on + strand at 421.737 kb on - strand at 421.800 kb on - strand at 421.920 kb on - strand, within Shewana3_0380 at 422.302 kb on - strand, within Shewana3_0380 at 422.360 kb on + strand, within Shewana3_0380 at 422.368 kb on - strand, within Shewana3_0380 at 422.385 kb on - strand, within Shewana3_0380 at 422.400 kb on - strand, within Shewana3_0380 at 422.495 kb on - strand, within Shewana3_0380 at 422.629 kb on - strand, within Shewana3_0380 at 422.985 kb on + strand, within Shewana3_0380 at 423.066 kb on - strand at 423.298 kb on + strand at 423.299 kb on + strand at 423.299 kb on + strand at 423.307 kb on - strand at 423.428 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.485 kb on - strand, within Shewana3_0381 at 423.615 kb on - strand, within Shewana3_0381 at 423.663 kb on + strand, within Shewana3_0381 at 423.677 kb on - strand, within Shewana3_0381 at 423.760 kb on - strand, within Shewana3_0381 at 423.788 kb on - strand, within Shewana3_0381 at 423.933 kb on - strand, within Shewana3_0381 at 423.943 kb on - strand, within Shewana3_0381 at 423.953 kb on - strand, within Shewana3_0381
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 421,273 + Shewana3_0379 0.67 -0.6 421,281 - Shewana3_0379 0.67 +0.8 421,302 + Shewana3_0379 0.69 +2.0 421,331 + Shewana3_0379 0.71 -0.4 421,492 + Shewana3_0379 0.82 -0.4 421,579 + Shewana3_0379 0.88 -0.5 421,711 + -0.0 421,737 - +1.7 421,800 - -0.7 421,920 - Shewana3_0380 0.11 +1.1 422,302 - Shewana3_0380 0.39 +0.6 422,360 + Shewana3_0380 0.43 -1.7 422,368 - Shewana3_0380 0.43 -0.3 422,385 - Shewana3_0380 0.45 +1.4 422,400 - Shewana3_0380 0.46 +0.4 422,495 - Shewana3_0380 0.52 -0.9 422,629 - Shewana3_0380 0.62 +0.3 422,985 + Shewana3_0380 0.88 -2.0 423,066 - +0.3 423,298 + +0.4 423,299 + +1.3 423,299 + +2.6 423,307 - -0.5 423,428 - Shewana3_0381 0.13 -3.5 423,485 - Shewana3_0381 0.15 -1.7 423,485 - Shewana3_0381 0.15 +1.8 423,615 - Shewana3_0381 0.21 +0.4 423,663 + Shewana3_0381 0.24 +0.6 423,677 - Shewana3_0381 0.24 +0.1 423,760 - Shewana3_0381 0.28 +0.5 423,788 - Shewana3_0381 0.29 -0.3 423,933 - Shewana3_0381 0.36 +0.2 423,943 - Shewana3_0381 0.37 -1.8 423,953 - Shewana3_0381 0.37 +0.7
Or see this region's nucleotide sequence