Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0306 and Shewana3_0307 are separated by 86 nucleotides Shewana3_0307 and Shewana3_0308 are separated by 174 nucleotides
Shewana3_0306: Shewana3_0306 - catalase/peroxidase HPI (RefSeq), at 342,661 to 344,847
_0306
Shewana3_0307: Shewana3_0307 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 344,934 to 346,181
_0307
Shewana3_0308: Shewana3_0308 - diguanylate cyclase (RefSeq), at 346,356 to 348,101
_0308
Position (kb) 344
345
346
347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 344.074 kb on + strand, within Shewana3_0306 at 344.149 kb on - strand, within Shewana3_0306 at 344.149 kb on - strand, within Shewana3_0306 at 344.219 kb on + strand, within Shewana3_0306 at 344.368 kb on + strand, within Shewana3_0306 at 344.385 kb on + strand, within Shewana3_0306 at 344.407 kb on + strand, within Shewana3_0306 at 344.478 kb on - strand, within Shewana3_0306 at 344.807 kb on + strand at 344.816 kb on - strand at 344.987 kb on + strand at 344.987 kb on + strand at 344.987 kb on + strand at 345.113 kb on + strand, within Shewana3_0307 at 345.152 kb on - strand, within Shewana3_0307 at 345.239 kb on - strand, within Shewana3_0307 at 345.266 kb on - strand, within Shewana3_0307 at 345.276 kb on + strand, within Shewana3_0307 at 345.497 kb on - strand, within Shewana3_0307 at 345.684 kb on - strand, within Shewana3_0307 at 345.797 kb on + strand, within Shewana3_0307 at 345.819 kb on - strand, within Shewana3_0307 at 345.852 kb on - strand, within Shewana3_0307 at 345.855 kb on + strand, within Shewana3_0307 at 345.855 kb on + strand, within Shewana3_0307 at 345.863 kb on - strand, within Shewana3_0307 at 346.053 kb on + strand, within Shewana3_0307 at 346.061 kb on - strand at 346.182 kb on - strand at 346.298 kb on + strand at 346.307 kb on - strand at 346.434 kb on + strand at 346.466 kb on + strand at 346.467 kb on + strand at 346.474 kb on - strand at 346.507 kb on - strand at 346.507 kb on - strand at 346.548 kb on + strand, within Shewana3_0308 at 346.679 kb on + strand, within Shewana3_0308 at 346.765 kb on - strand, within Shewana3_0308
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 344,074 + Shewana3_0306 0.65 +1.8 344,149 - Shewana3_0306 0.68 -0.5 344,149 - Shewana3_0306 0.68 +0.6 344,219 + Shewana3_0306 0.71 +0.1 344,368 + Shewana3_0306 0.78 -1.1 344,385 + Shewana3_0306 0.79 -3.5 344,407 + Shewana3_0306 0.80 -0.6 344,478 - Shewana3_0306 0.83 +0.7 344,807 + -0.0 344,816 - +0.5 344,987 + +2.2 344,987 + -1.6 344,987 + +1.5 345,113 + Shewana3_0307 0.14 -1.1 345,152 - Shewana3_0307 0.17 +3.1 345,239 - Shewana3_0307 0.24 +0.3 345,266 - Shewana3_0307 0.27 -0.6 345,276 + Shewana3_0307 0.27 +0.2 345,497 - Shewana3_0307 0.45 +0.0 345,684 - Shewana3_0307 0.60 -0.1 345,797 + Shewana3_0307 0.69 -1.4 345,819 - Shewana3_0307 0.71 +2.4 345,852 - Shewana3_0307 0.74 -0.2 345,855 + Shewana3_0307 0.74 +3.7 345,855 + Shewana3_0307 0.74 +0.4 345,863 - Shewana3_0307 0.74 +0.3 346,053 + Shewana3_0307 0.90 +0.4 346,061 - -1.4 346,182 - -0.9 346,298 + -0.5 346,307 - +0.3 346,434 + +2.7 346,466 + -0.6 346,467 + +0.6 346,474 - -1.7 346,507 - -0.1 346,507 - +1.2 346,548 + Shewana3_0308 0.11 -0.2 346,679 + Shewana3_0308 0.18 -0.8 346,765 - Shewana3_0308 0.23 -0.4
Or see this region's nucleotide sequence