Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0297 and Shewana3_0298 are separated by 389 nucleotides Shewana3_0298 and Shewana3_0299 are separated by 59 nucleotides
Shewana3_0297: Shewana3_0297 - sodium:dicarboxylate symporter (RefSeq), at 329,865 to 331,109
_0297
Shewana3_0298: Shewana3_0298 - hypothetical protein (RefSeq), at 331,499 to 331,765
_0298
Shewana3_0299: Shewana3_0299 - TonB-dependent siderophore receptor (RefSeq), at 331,825 to 334,062
_0299
Position (kb) 331
332 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 330.566 kb on - strand, within Shewana3_0297 at 330.700 kb on + strand, within Shewana3_0297 at 330.753 kb on + strand, within Shewana3_0297 at 330.763 kb on + strand, within Shewana3_0297 at 330.945 kb on + strand, within Shewana3_0297 at 330.971 kb on + strand, within Shewana3_0297 at 331.113 kb on - strand at 331.144 kb on + strand at 331.157 kb on - strand at 331.162 kb on - strand at 331.252 kb on - strand at 331.325 kb on + strand at 331.330 kb on + strand at 331.357 kb on - strand at 331.363 kb on + strand at 331.611 kb on + strand, within Shewana3_0298 at 331.619 kb on - strand, within Shewana3_0298 at 331.821 kb on + strand at 331.829 kb on - strand at 332.106 kb on - strand, within Shewana3_0299 at 332.150 kb on + strand, within Shewana3_0299 at 332.158 kb on + strand, within Shewana3_0299 at 332.164 kb on + strand, within Shewana3_0299 at 332.270 kb on + strand, within Shewana3_0299 at 332.297 kb on - strand, within Shewana3_0299 at 332.334 kb on - strand, within Shewana3_0299 at 332.383 kb on + strand, within Shewana3_0299 at 332.432 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.680 kb on - strand, within Shewana3_0299 at 332.714 kb on - strand, within Shewana3_0299
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 330,566 - Shewana3_0297 0.56 -0.8 330,700 + Shewana3_0297 0.67 +1.3 330,753 + Shewana3_0297 0.71 +1.5 330,763 + Shewana3_0297 0.72 +0.3 330,945 + Shewana3_0297 0.87 -2.8 330,971 + Shewana3_0297 0.89 +1.8 331,113 - +0.1 331,144 + +0.1 331,157 - +1.6 331,162 - -1.1 331,252 - +0.0 331,325 + -2.8 331,330 + +0.7 331,357 - -0.5 331,363 + +0.2 331,611 + Shewana3_0298 0.42 -0.7 331,619 - Shewana3_0298 0.45 +1.9 331,821 + -2.5 331,829 - -1.9 332,106 - Shewana3_0299 0.13 -0.2 332,150 + Shewana3_0299 0.15 +0.2 332,158 + Shewana3_0299 0.15 +0.4 332,164 + Shewana3_0299 0.15 +0.7 332,270 + Shewana3_0299 0.20 +1.1 332,297 - Shewana3_0299 0.21 +0.3 332,334 - Shewana3_0299 0.23 +0.8 332,383 + Shewana3_0299 0.25 +0.5 332,432 - Shewana3_0299 0.27 -3.1 332,680 - Shewana3_0299 0.38 -0.2 332,680 - Shewana3_0299 0.38 +0.5 332,680 - Shewana3_0299 0.38 +0.6 332,714 - Shewana3_0299 0.40 +0.8
Or see this region's nucleotide sequence