Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0250 and Shewana3_0251 are separated by 342 nucleotides Shewana3_0251 and Shewana3_0252 are separated by 58 nucleotides
Shewana3_0250: Shewana3_0250 - aldehyde dehydrogenase (RefSeq), at 280,166 to 281,686
_0250
Shewana3_0251: Shewana3_0251 - Fis family GAF modulated sigma54 specific transcriptional regulator (RefSeq), at 282,029 to 283,915
_0251
Shewana3_0252: Shewana3_0252 - ATPase domain-containing protein (RefSeq), at 283,974 to 285,323
_0252
Position (kb) 282
283
284 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 281.128 kb on + strand, within Shewana3_0250 at 281.220 kb on + strand, within Shewana3_0250 at 281.276 kb on + strand, within Shewana3_0250 at 281.369 kb on - strand, within Shewana3_0250 at 281.432 kb on - strand, within Shewana3_0250 at 281.765 kb on - strand at 281.888 kb on - strand at 282.011 kb on + strand at 282.011 kb on + strand at 282.011 kb on + strand at 282.102 kb on + strand at 282.102 kb on + strand at 282.125 kb on - strand at 282.388 kb on + strand, within Shewana3_0251 at 282.576 kb on + strand, within Shewana3_0251 at 282.584 kb on - strand, within Shewana3_0251 at 282.615 kb on - strand, within Shewana3_0251 at 282.622 kb on + strand, within Shewana3_0251 at 282.630 kb on - strand, within Shewana3_0251 at 282.786 kb on + strand, within Shewana3_0251 at 282.914 kb on + strand, within Shewana3_0251 at 282.914 kb on + strand, within Shewana3_0251 at 283.084 kb on + strand, within Shewana3_0251 at 283.084 kb on + strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.092 kb on - strand, within Shewana3_0251 at 283.107 kb on - strand, within Shewana3_0251 at 283.266 kb on + strand, within Shewana3_0251 at 283.388 kb on + strand, within Shewana3_0251 at 283.532 kb on - strand, within Shewana3_0251 at 283.775 kb on - strand at 284.267 kb on - strand, within Shewana3_0252 at 284.813 kb on - strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.831 kb on + strand, within Shewana3_0252 at 284.835 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.839 kb on - strand, within Shewana3_0252 at 284.883 kb on - strand, within Shewana3_0252
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 281,128 + Shewana3_0250 0.63 +0.3 281,220 + Shewana3_0250 0.69 -0.5 281,276 + Shewana3_0250 0.73 +0.4 281,369 - Shewana3_0250 0.79 +0.4 281,432 - Shewana3_0250 0.83 -2.2 281,765 - -1.1 281,888 - -0.2 282,011 + -1.1 282,011 + +0.5 282,011 + -0.4 282,102 + +0.6 282,102 + +1.0 282,125 - +1.5 282,388 + Shewana3_0251 0.19 -0.6 282,576 + Shewana3_0251 0.29 -0.7 282,584 - Shewana3_0251 0.29 +0.4 282,615 - Shewana3_0251 0.31 +0.4 282,622 + Shewana3_0251 0.31 +0.4 282,630 - Shewana3_0251 0.32 +1.1 282,786 + Shewana3_0251 0.40 +0.8 282,914 + Shewana3_0251 0.47 +0.1 282,914 + Shewana3_0251 0.47 +0.7 283,084 + Shewana3_0251 0.56 +0.2 283,084 + Shewana3_0251 0.56 -0.6 283,092 - Shewana3_0251 0.56 +0.4 283,092 - Shewana3_0251 0.56 -5.0 283,092 - Shewana3_0251 0.56 -0.8 283,107 - Shewana3_0251 0.57 -0.7 283,266 + Shewana3_0251 0.66 +0.1 283,388 + Shewana3_0251 0.72 -0.0 283,532 - Shewana3_0251 0.80 -2.1 283,775 - +0.1 284,267 - Shewana3_0252 0.22 +1.0 284,813 - Shewana3_0252 0.62 +0.2 284,831 + Shewana3_0252 0.63 +1.2 284,831 + Shewana3_0252 0.63 +0.4 284,831 + Shewana3_0252 0.63 -1.7 284,835 - Shewana3_0252 0.64 +3.4 284,839 - Shewana3_0252 0.64 -0.9 284,839 - Shewana3_0252 0.64 -1.4 284,883 - Shewana3_0252 0.67 -0.0
Or see this region's nucleotide sequence