Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0146 and Shewana3_0147 are separated by 247 nucleotides Shewana3_0147 and hslO are separated by 202 nucleotides
Shewana3_0146: Shewana3_0146 - AbgT putative transporter (RefSeq), at 168,954 to 170,513
_0146
Shewana3_0147: Shewana3_0147 - phosphoenolpyruvate carboxykinase (RefSeq), at 170,761 to 172,302
_0147
Shewana3_0148: hslO - Hsp33-like chaperonin (RefSeq), at 172,505 to 173,365
hslO
Position (kb) 170
171
172
173 Strain fitness (log2 ratio) -1
0
1
2
3 at 169.941 kb on - strand, within Shewana3_0146 at 170.135 kb on - strand, within Shewana3_0146 at 170.180 kb on + strand, within Shewana3_0146 at 170.245 kb on - strand, within Shewana3_0146 at 170.888 kb on + strand at 170.945 kb on + strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.153 kb on - strand, within Shewana3_0147 at 171.316 kb on - strand, within Shewana3_0147 at 171.343 kb on + strand, within Shewana3_0147 at 171.368 kb on - strand, within Shewana3_0147 at 171.441 kb on - strand, within Shewana3_0147 at 171.454 kb on + strand, within Shewana3_0147 at 171.622 kb on + strand, within Shewana3_0147 at 171.640 kb on - strand, within Shewana3_0147 at 171.654 kb on + strand, within Shewana3_0147 at 171.735 kb on - strand, within Shewana3_0147 at 171.958 kb on - strand, within Shewana3_0147 at 171.966 kb on - strand, within Shewana3_0147 at 172.062 kb on + strand, within Shewana3_0147 at 172.130 kb on + strand, within Shewana3_0147 at 172.224 kb on - strand at 172.252 kb on + strand at 172.270 kb on + strand at 172.309 kb on - strand at 172.479 kb on - strand at 172.491 kb on - strand at 172.596 kb on - strand, within hslO at 172.671 kb on - strand, within hslO at 172.933 kb on + strand, within hslO at 172.933 kb on + strand, within hslO at 172.951 kb on - strand, within hslO at 173.029 kb on + strand, within hslO at 173.029 kb on + strand, within hslO at 173.037 kb on - strand, within hslO at 173.092 kb on + strand, within hslO at 173.100 kb on - strand, within hslO at 173.151 kb on + strand, within hslO
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 169,941 - Shewana3_0146 0.63 +0.1 170,135 - Shewana3_0146 0.76 +0.7 170,180 + Shewana3_0146 0.79 +0.3 170,245 - Shewana3_0146 0.83 +0.2 170,888 + +1.0 170,945 + Shewana3_0147 0.12 +0.6 171,153 - Shewana3_0147 0.25 +2.0 171,153 - Shewana3_0147 0.25 +1.1 171,316 - Shewana3_0147 0.36 -0.3 171,343 + Shewana3_0147 0.38 -0.7 171,368 - Shewana3_0147 0.39 -0.3 171,441 - Shewana3_0147 0.44 -1.4 171,454 + Shewana3_0147 0.45 -0.1 171,622 + Shewana3_0147 0.56 +0.7 171,640 - Shewana3_0147 0.57 +0.2 171,654 + Shewana3_0147 0.58 -0.5 171,735 - Shewana3_0147 0.63 +0.5 171,958 - Shewana3_0147 0.78 +3.1 171,966 - Shewana3_0147 0.78 -0.9 172,062 + Shewana3_0147 0.84 +0.1 172,130 + Shewana3_0147 0.89 +0.2 172,224 - +1.8 172,252 + +1.8 172,270 + -0.2 172,309 - +0.1 172,479 - +0.1 172,491 - +0.5 172,596 - hslO Shewana3_0148 0.11 +2.1 172,671 - hslO Shewana3_0148 0.19 -0.9 172,933 + hslO Shewana3_0148 0.50 +2.2 172,933 + hslO Shewana3_0148 0.50 -1.6 172,951 - hslO Shewana3_0148 0.52 +1.3 173,029 + hslO Shewana3_0148 0.61 -1.1 173,029 + hslO Shewana3_0148 0.61 +2.3 173,037 - hslO Shewana3_0148 0.62 +0.5 173,092 + hslO Shewana3_0148 0.68 +1.1 173,100 - hslO Shewana3_0148 0.69 -0.8 173,151 + hslO Shewana3_0148 0.75 +1.0
Or see this region's nucleotide sequence