Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0081 and Shewana3_0082 are separated by 107 nucleotides Shewana3_0082 and Shewana3_0083 are separated by 118 nucleotides Shewana3_0083 and Shewana3_0084 are separated by 20 nucleotides Shewana3_0084 and Shewana3_0085 are separated by 59 nucleotides Shewana3_0085 and Shewana3_0086 are separated by 160 nucleotides
Shewana3_0081: Shewana3_0081 - MORN repeat-containing protein (RefSeq), at 94,414 to 96,903
_0081
Shewana3_0082: Shewana3_0082 - thioesterase superfamily protein (RefSeq), at 97,011 to 97,421
_0082
Shewana3_0083: Shewana3_0083 - HPP family protein (RefSeq), at 97,540 to 98,088
_0083
Shewana3_0084: Shewana3_0084 - hypothetical protein (RefSeq), at 98,109 to 98,372
_0084
Shewana3_0085: Shewana3_0085 - thioesterase superfamily protein (RefSeq), at 98,432 to 98,896
_0085
Shewana3_0086: Shewana3_0086 - MerR family transcriptional regulator (RefSeq), at 99,057 to 99,410
_0086
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1 at 96.586 kb on + strand, within Shewana3_0081 at 96.676 kb on - strand at 96.836 kb on - strand at 96.836 kb on - strand at 96.975 kb on + strand at 96.983 kb on - strand at 97.065 kb on + strand, within Shewana3_0082 at 97.111 kb on - strand, within Shewana3_0082 at 97.267 kb on + strand, within Shewana3_0082 at 97.341 kb on + strand, within Shewana3_0082 at 97.346 kb on - strand, within Shewana3_0082 at 97.392 kb on - strand at 97.393 kb on + strand at 97.406 kb on + strand at 97.424 kb on - strand at 97.575 kb on + strand at 97.575 kb on + strand at 97.688 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.726 kb on + strand, within Shewana3_0083 at 97.734 kb on - strand, within Shewana3_0083 at 97.789 kb on + strand, within Shewana3_0083 at 97.948 kb on + strand, within Shewana3_0083 at 98.072 kb on - strand at 98.175 kb on + strand, within Shewana3_0084 at 98.175 kb on + strand, within Shewana3_0084 at 98.504 kb on - strand, within Shewana3_0085 at 98.507 kb on + strand, within Shewana3_0085 at 98.586 kb on - strand, within Shewana3_0085 at 98.694 kb on + strand, within Shewana3_0085 at 98.830 kb on + strand, within Shewana3_0085 at 98.832 kb on + strand, within Shewana3_0085 at 98.837 kb on - strand, within Shewana3_0085 at 98.840 kb on - strand, within Shewana3_0085 at 98.990 kb on + strand at 99.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 96,586 + Shewana3_0081 0.87 -0.1 96,676 - -0.8 96,836 - -0.1 96,836 - +0.1 96,975 + +1.3 96,983 - -0.6 97,065 + Shewana3_0082 0.13 +0.2 97,111 - Shewana3_0082 0.24 -0.2 97,267 + Shewana3_0082 0.62 -1.5 97,341 + Shewana3_0082 0.80 -2.0 97,346 - Shewana3_0082 0.82 -0.8 97,392 - +0.6 97,393 + +0.3 97,406 + +0.4 97,424 - +0.3 97,575 + +0.7 97,575 + +0.7 97,688 + Shewana3_0083 0.27 -0.3 97,726 + Shewana3_0083 0.34 -0.5 97,726 + Shewana3_0083 0.34 -0.5 97,734 - Shewana3_0083 0.35 +1.5 97,789 + Shewana3_0083 0.45 +1.5 97,948 + Shewana3_0083 0.74 -1.1 98,072 - +0.1 98,175 + Shewana3_0084 0.25 +0.4 98,175 + Shewana3_0084 0.25 +0.1 98,504 - Shewana3_0085 0.15 +0.5 98,507 + Shewana3_0085 0.16 +0.7 98,586 - Shewana3_0085 0.33 +0.6 98,694 + Shewana3_0085 0.56 +0.1 98,830 + Shewana3_0085 0.86 +0.8 98,832 + Shewana3_0085 0.86 -0.5 98,837 - Shewana3_0085 0.87 +1.2 98,840 - Shewana3_0085 0.88 +0.6 98,990 + -1.8 99,008 - +1.0
Or see this region's nucleotide sequence