Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4374 and Shewana3_4375 are separated by 105 nucleotides Shewana3_4375 and Shewana3_4376 are separated by 76 nucleotides Shewana3_4376 and Shewana3_4377 overlap by 23 nucleotides
Shewana3_4374: Shewana3_4374 - hypothetical protein (RefSeq), at 262,816 to 263,064
_4374
Shewana3_4375: Shewana3_4375 - hypothetical protein (RefSeq), at 263,170 to 263,847
_4375
Shewana3_4376: Shewana3_4376 - hypothetical protein (RefSeq), at 263,924 to 264,508
_4376
Shewana3_4377: Shewana3_4377 - phage integrase family protein (RefSeq), at 264,486 to 265,601
_4377
Position (kb) 263
264
265 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 262.953 kb on + strand, within Shewana3_4374 at 263.024 kb on + strand, within Shewana3_4374 at 263.241 kb on + strand, within Shewana3_4375 at 263.341 kb on - strand, within Shewana3_4375 at 263.416 kb on - strand, within Shewana3_4375 at 263.702 kb on + strand, within Shewana3_4375 at 264.032 kb on - strand, within Shewana3_4376 at 264.057 kb on + strand, within Shewana3_4376 at 264.480 kb on + strand at 264.522 kb on - strand at 264.524 kb on + strand at 264.524 kb on + strand at 264.524 kb on + strand at 264.541 kb on + strand at 264.583 kb on + strand at 264.674 kb on + strand, within Shewana3_4377 at 264.920 kb on + strand, within Shewana3_4377 at 264.920 kb on + strand, within Shewana3_4377 at 264.920 kb on + strand, within Shewana3_4377 at 264.965 kb on + strand, within Shewana3_4377 at 264.995 kb on + strand, within Shewana3_4377 at 265.028 kb on - strand, within Shewana3_4377 at 265.276 kb on + strand, within Shewana3_4377 at 265.276 kb on + strand, within Shewana3_4377 at 265.338 kb on + strand, within Shewana3_4377 at 265.346 kb on - strand, within Shewana3_4377
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 262,953 + Shewana3_4374 0.55 -4.1 263,024 + Shewana3_4374 0.84 -0.1 263,241 + Shewana3_4375 0.10 +0.8 263,341 - Shewana3_4375 0.25 +1.4 263,416 - Shewana3_4375 0.36 +3.0 263,702 + Shewana3_4375 0.78 -0.0 264,032 - Shewana3_4376 0.18 -1.1 264,057 + Shewana3_4376 0.23 -3.4 264,480 + -0.9 264,522 - -2.1 264,524 + -0.5 264,524 + -0.3 264,524 + +0.3 264,541 + +0.0 264,583 + +0.8 264,674 + Shewana3_4377 0.17 -1.0 264,920 + Shewana3_4377 0.39 -3.9 264,920 + Shewana3_4377 0.39 +2.8 264,920 + Shewana3_4377 0.39 -1.3 264,965 + Shewana3_4377 0.43 -1.0 264,995 + Shewana3_4377 0.46 -1.7 265,028 - Shewana3_4377 0.49 +0.4 265,276 + Shewana3_4377 0.71 +0.5 265,276 + Shewana3_4377 0.71 +3.6 265,338 + Shewana3_4377 0.76 +0.9 265,346 - Shewana3_4377 0.77 +0.7
Or see this region's nucleotide sequence