Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4368 and Shewana3_4369 are separated by 112 nucleotides Shewana3_4369 and Shewana3_4370 are separated by 189 nucleotides Shewana3_4370 and Shewana3_4371 are separated by 196 nucleotides
Shewana3_4368: Shewana3_4368 - chromosome segregation ATPases-like protein (RefSeq), at 256,919 to 257,974
_4368
Shewana3_4369: Shewana3_4369 - hypothetical protein (RefSeq), at 258,087 to 258,452
_4369
Shewana3_4370: Shewana3_4370 - hypothetical protein (RefSeq), at 258,642 to 259,220
_4370
Shewana3_4371: Shewana3_4371 - hypothetical protein (RefSeq), at 259,417 to 259,845
_4371
Position (kb) 258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 257.344 kb on + strand, within Shewana3_4368 at 257.471 kb on - strand, within Shewana3_4368 at 258.148 kb on + strand, within Shewana3_4369 at 258.200 kb on + strand, within Shewana3_4369 at 258.206 kb on - strand, within Shewana3_4369 at 258.208 kb on - strand, within Shewana3_4369 at 258.208 kb on - strand, within Shewana3_4369 at 258.208 kb on - strand, within Shewana3_4369 at 258.217 kb on + strand, within Shewana3_4369 at 258.228 kb on - strand, within Shewana3_4369 at 258.269 kb on + strand, within Shewana3_4369 at 258.385 kb on + strand, within Shewana3_4369 at 258.396 kb on + strand, within Shewana3_4369 at 258.421 kb on + strand at 258.421 kb on + strand at 258.456 kb on + strand at 258.483 kb on + strand at 258.483 kb on + strand at 258.491 kb on - strand at 258.497 kb on + strand at 258.543 kb on - strand at 258.590 kb on + strand at 258.603 kb on - strand at 258.607 kb on - strand at 258.640 kb on + strand at 258.640 kb on + strand at 258.640 kb on + strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.648 kb on - strand at 258.653 kb on - strand at 258.664 kb on + strand at 258.671 kb on + strand at 258.671 kb on + strand at 258.671 kb on + strand at 258.671 kb on + strand at 258.672 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.679 kb on - strand at 258.680 kb on - strand at 258.702 kb on + strand at 258.703 kb on - strand, within Shewana3_4370 at 258.703 kb on - strand, within Shewana3_4370 at 258.703 kb on - strand, within Shewana3_4370 at 258.764 kb on + strand, within Shewana3_4370 at 258.784 kb on - strand, within Shewana3_4370 at 258.784 kb on - strand, within Shewana3_4370 at 258.872 kb on - strand, within Shewana3_4370 at 258.929 kb on - strand, within Shewana3_4370 at 258.929 kb on - strand, within Shewana3_4370 at 258.929 kb on - strand, within Shewana3_4370 at 259.059 kb on + strand, within Shewana3_4370 at 259.059 kb on + strand, within Shewana3_4370 at 259.064 kb on + strand, within Shewana3_4370 at 259.081 kb on - strand, within Shewana3_4370 at 259.081 kb on - strand, within Shewana3_4370 at 259.086 kb on - strand, within Shewana3_4370 at 259.086 kb on - strand, within Shewana3_4370 at 259.157 kb on - strand, within Shewana3_4370 at 259.159 kb on + strand, within Shewana3_4370 at 259.159 kb on + strand, within Shewana3_4370 at 259.159 kb on + strand, within Shewana3_4370 at 259.159 kb on + strand, within Shewana3_4370 at 259.159 kb on + strand, within Shewana3_4370 at 259.159 kb on + strand, within Shewana3_4370 at 259.160 kb on - strand, within Shewana3_4370 at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.167 kb on - strand at 259.168 kb on - strand at 259.168 kb on - strand at 259.226 kb on - strand at 259.253 kb on - strand at 259.334 kb on + strand at 259.342 kb on - strand at 259.429 kb on - strand at 259.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 257,344 + Shewana3_4368 0.40 -0.2 257,471 - Shewana3_4368 0.52 +0.3 258,148 + Shewana3_4369 0.17 +0.1 258,200 + Shewana3_4369 0.31 +3.1 258,206 - Shewana3_4369 0.33 -0.2 258,208 - Shewana3_4369 0.33 +0.4 258,208 - Shewana3_4369 0.33 +3.4 258,208 - Shewana3_4369 0.33 +0.2 258,217 + Shewana3_4369 0.36 +0.0 258,228 - Shewana3_4369 0.39 +1.0 258,269 + Shewana3_4369 0.50 -2.2 258,385 + Shewana3_4369 0.81 +0.4 258,396 + Shewana3_4369 0.84 +0.7 258,421 + -0.6 258,421 + -1.3 258,456 + -1.9 258,483 + -0.3 258,483 + +0.8 258,491 - +1.0 258,497 + -2.5 258,543 - +0.5 258,590 + +1.1 258,603 - +0.6 258,607 - +0.8 258,640 + +1.0 258,640 + -0.5 258,640 + -0.3 258,648 - +0.2 258,648 - -0.5 258,648 - -1.3 258,648 - +2.2 258,648 - -0.2 258,648 - +0.2 258,648 - +0.1 258,648 - +0.3 258,648 - -0.5 258,648 - +0.3 258,648 - -0.1 258,648 - +1.4 258,648 - -0.6 258,653 - +0.4 258,664 + -0.5 258,671 + +0.3 258,671 + -1.0 258,671 + +0.9 258,671 + +0.1 258,672 - -1.3 258,679 - -1.2 258,679 - -2.4 258,679 - +0.0 258,679 - +1.1 258,679 - +0.3 258,679 - +0.2 258,679 - +0.6 258,680 - -0.2 258,702 + -0.2 258,703 - Shewana3_4370 0.11 +1.1 258,703 - Shewana3_4370 0.11 +0.6 258,703 - Shewana3_4370 0.11 +0.9 258,764 + Shewana3_4370 0.21 -0.1 258,784 - Shewana3_4370 0.25 +1.3 258,784 - Shewana3_4370 0.25 -1.0 258,872 - Shewana3_4370 0.40 -0.2 258,929 - Shewana3_4370 0.50 +1.0 258,929 - Shewana3_4370 0.50 +0.4 258,929 - Shewana3_4370 0.50 -0.6 259,059 + Shewana3_4370 0.72 +0.8 259,059 + Shewana3_4370 0.72 -0.9 259,064 + Shewana3_4370 0.73 +0.1 259,081 - Shewana3_4370 0.76 -0.4 259,081 - Shewana3_4370 0.76 -1.4 259,086 - Shewana3_4370 0.77 +0.3 259,086 - Shewana3_4370 0.77 +1.5 259,157 - Shewana3_4370 0.89 -0.4 259,159 + Shewana3_4370 0.89 +0.6 259,159 + Shewana3_4370 0.89 -0.6 259,159 + Shewana3_4370 0.89 -0.6 259,159 + Shewana3_4370 0.89 +0.3 259,159 + Shewana3_4370 0.89 +0.1 259,159 + Shewana3_4370 0.89 -0.3 259,160 - Shewana3_4370 0.89 -0.4 259,167 - +1.0 259,167 - +0.5 259,167 - -1.6 259,167 - +0.0 259,167 - -0.6 259,167 - -2.7 259,167 - +1.2 259,167 - -1.1 259,167 - +0.4 259,167 - +1.1 259,167 - +0.8 259,167 - +1.3 259,167 - +0.4 259,167 - +0.1 259,167 - -0.5 259,167 - +0.2 259,167 - +0.6 259,167 - -1.6 259,167 - +0.0 259,167 - -1.3 259,167 - +0.5 259,167 - +0.4 259,167 - -0.4 259,168 - +1.2 259,168 - +2.2 259,226 - -3.5 259,253 - +0.8 259,334 + -2.8 259,342 - +1.2 259,429 - -0.2 259,429 - +0.6
Or see this region's nucleotide sequence