Strain Fitness in Shewanella loihica PV-4 around Shew_3001

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,560,887	+		Shew_3000	0.60	-0.3
3,561,059	+		Shew_3000	0.70	-0.0
3,561,067	-		Shew_3000	0.70	+0.2
3,561,067	-		Shew_3000	0.70	+0.4
3,561,147	+		Shew_3000	0.75	+0.4
3,561,147	+		Shew_3000	0.75	-0.1
3,561,474	-				+2.5
3,561,520	+				-0.0
3,561,627	+				+0.2
3,562,011	-		Shew_3001	0.11	-0.0
3,562,028	-		Shew_3001	0.12	-0.4
3,562,070	-		Shew_3001	0.14	+0.1
3,562,116	-		Shew_3001	0.16	+0.4
3,562,228	-		Shew_3001	0.21	+0.7
3,562,455	+		Shew_3001	0.32	+0.1
3,562,455	+		Shew_3001	0.32	-0.2
3,562,455	+		Shew_3001	0.32	-0.2
3,562,463	-		Shew_3001	0.32	+0.1
3,562,938	-		Shew_3001	0.54	+0.1
3,563,041	-		Shew_3001	0.59	-0.8
3,563,066	+		Shew_3001	0.60	+0.3
3,563,074	-		Shew_3001	0.60	-0.0
3,563,275	+		Shew_3001	0.69	+0.2
3,563,560	-		Shew_3001	0.83	-0.2
3,563,928	-				+0.9
3,563,938	-				+0.9
3,563,948	-				+0.2
3,564,231	+		Shew_3002	0.35	+0.3
3,564,368	+		Shew_3002	0.52	-0.0
3,564,453	-		Shew_3002	0.63	-1.1