Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1281 and Shew_1282 are separated by 617 nucleotides Shew_1282 and Shew_1283 are separated by 127 nucleotides Shew_1283 and Shew_1284 are separated by 263 nucleotides
Shew_1281: Shew_1281 - hypothetical protein (RefSeq), at 1,481,125 to 1,481,868
_1281
Shew_1282: Shew_1282 - hypothetical protein (RefSeq), at 1,482,486 to 1,482,710
_1282
Shew_1283: Shew_1283 - NrfJ-related protein (RefSeq), at 1,482,838 to 1,483,140
_1283
Shew_1284: Shew_1284 - GCN5-related N-acetyltransferase (RefSeq), at 1,483,404 to 1,483,904
_1284
Position (kb) 1482
1483 Strain fitness (log2 ratio) -1
0
1 at 1481.640 kb on - strand, within Shew_1281 at 1482.082 kb on + strand at 1482.464 kb on - strand at 1482.648 kb on + strand, within Shew_1282 at 1482.817 kb on - strand at 1483.173 kb on + strand at 1483.376 kb on + strand at 1483.453 kb on - strand at 1483.503 kb on + strand, within Shew_1284 at 1483.557 kb on + strand, within Shew_1284 at 1483.574 kb on + strand, within Shew_1284
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,481,640 - Shew_1281 0.69 +1.3 1,482,082 + +0.2 1,482,464 - +0.2 1,482,648 + Shew_1282 0.72 +0.4 1,482,817 - +0.8 1,483,173 + +0.4 1,483,376 + +0.2 1,483,453 - +1.4 1,483,503 + Shew_1284 0.20 -1.1 1,483,557 + Shew_1284 0.31 +0.1 1,483,574 + Shew_1284 0.34 +0.1
Or see this region's nucleotide sequence