Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1277 and Shew_1278 are separated by 2 nucleotides Shew_1278 and Shew_1279 are separated by 23 nucleotides Shew_1279 and Shew_1280 are separated by 279 nucleotides Shew_1280 and Shew_1281 overlap by 41 nucleotides
Shew_1277: Shew_1277 - putative signal transduction protein (RefSeq), at 1,477,688 to 1,479,136
_1277
Shew_1278: Shew_1278 - hypothetical protein (RefSeq), at 1,479,139 to 1,479,612
_1278
Shew_1279: Shew_1279 - hypothetical protein (RefSeq), at 1,479,636 to 1,480,460
_1279
Shew_1280: Shew_1280 - CopG family transcriptional regulator (RefSeq), at 1,480,740 to 1,481,165
_1280
Shew_1281: Shew_1281 - hypothetical protein (RefSeq), at 1,481,125 to 1,481,868
_1281
Position (kb) 1479
1480
1481 Strain fitness (log2 ratio) -1
0
1 at 1479.139 kb on - strand at 1479.158 kb on + strand at 1479.511 kb on + strand, within Shew_1278 at 1480.426 kb on + strand at 1480.441 kb on + strand at 1480.614 kb on - strand at 1480.641 kb on + strand at 1480.750 kb on + strand at 1480.889 kb on + strand, within Shew_1280 at 1480.897 kb on - strand, within Shew_1280 at 1480.897 kb on - strand, within Shew_1280 at 1481.122 kb on + strand, within Shew_1280 at 1481.122 kb on + strand, within Shew_1280 at 1481.414 kb on + strand, within Shew_1281
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,479,139 - -0.1 1,479,158 + -0.0 1,479,511 + Shew_1278 0.78 +1.4 1,480,426 + +0.4 1,480,441 + +0.3 1,480,614 - +0.6 1,480,641 + +1.0 1,480,750 + +0.4 1,480,889 + Shew_1280 0.35 +0.2 1,480,897 - Shew_1280 0.37 +0.0 1,480,897 - Shew_1280 0.37 -0.0 1,481,122 + Shew_1280 0.90 -0.6 1,481,122 + Shew_1280 0.90 -0.2 1,481,414 + Shew_1281 0.39 +0.1
Or see this region's nucleotide sequence