Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0941 and Shew_0942 are separated by 71 nucleotides Shew_0942 and Shew_0943 are separated by 61 nucleotides Shew_0943 and Shew_0944 are separated by 56 nucleotides Shew_0944 and Shew_0945 are separated by 372 nucleotides
Shew_0941: Shew_0941 - permease YjgP/YjgQ family protein (RefSeq), at 1,082,446 to 1,083,504
_0941
Shew_0942: Shew_0942 - RDD domain-containing protein (RefSeq), at 1,083,576 to 1,084,085
_0942
Shew_0943: Shew_0943 - hypothetical protein (RefSeq), at 1,084,147 to 1,084,407
_0943
Shew_0944: Shew_0944 - GCN5-related N-acetyltransferase (RefSeq), at 1,084,464 to 1,084,976
_0944
Shew_0945: Shew_0945 - hypothetical protein (RefSeq), at 1,085,349 to 1,085,984
_0945
Position (kb)
1084
1085 Strain fitness (log2 ratio)
-1
0
1 at 1083.850 kb on + strand, within Shew_0942 at 1083.853 kb on + strand, within Shew_0942 at 1083.971 kb on + strand, within Shew_0942 at 1084.547 kb on - strand, within Shew_0944 at 1085.032 kb on + strand at 1085.057 kb on - strand at 1085.080 kb on + strand at 1085.144 kb on - strand at 1085.184 kb on - strand at 1085.421 kb on + strand, within Shew_0945 at 1085.573 kb on - strand, within Shew_0945 at 1085.678 kb on + strand, within Shew_0945 at 1085.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,083,850 + Shew_0942 0.54 -0.5 1,083,853 + Shew_0942 0.54 +0.1 1,083,971 + Shew_0942 0.77 -0.6 1,084,547 - Shew_0944 0.16 -0.6 1,085,032 + -0.4 1,085,057 - +0.3 1,085,080 + +0.0 1,085,144 - +0.0 1,085,184 - +0.7 1,085,421 + Shew_0945 0.11 +0.1 1,085,573 - Shew_0945 0.35 +0.2 1,085,678 + Shew_0945 0.52 -0.8 1,085,956 - +0.3
Or see this region's nucleotide sequence