Strain Fitness in Shewanella loihica PV-4 around Shew_0810

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0809 and Shew_0810 are separated by 265 nucleotidesShew_0810 and Shew_0811 are separated by 406 nucleotides Shew_0809: Shew_0809 - formate dehydrogenase, alpha subunit (RefSeq), at 927,171 to 931,403 _0809 Shew_0810: Shew_0810 - ion transport 2 domain-containing protein (RefSeq), at 931,669 to 932,649 _0810 Shew_0811: Shew_0811 - peptide chain release factor 2 (RefSeq), at 933,056 to 933,937 _0811 Position (kb) 931 932 933Strain fitness (log2 ratio) -1 0 1at 930.731 kb on + strand, within Shew_0809at 930.786 kb on + strand, within Shew_0809at 931.046 kb on + strandat 931.054 kb on - strandat 931.054 kb on - strandat 931.087 kb on - strandat 931.197 kb on + strandat 931.317 kb on + strandat 931.534 kb on - strandat 931.653 kb on + strandat 932.197 kb on + strand, within Shew_0810at 932.327 kb on - strand, within Shew_0810at 932.349 kb on + strand, within Shew_0810at 932.629 kb on + strandat 932.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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930,731 + Shew_0809 0.84 +0.1
930,786 + Shew_0809 0.85 +0.4
931,046 + +0.1
931,054 - +0.2
931,054 - -0.4
931,087 - +0.2
931,197 + -0.2
931,317 + +0.0
931,534 - -0.4
931,653 + +0.1
932,197 + Shew_0810 0.54 +0.3
932,327 - Shew_0810 0.67 -0.2
932,349 + Shew_0810 0.69 -0.7
932,629 + +0.8
932,637 - +0.5

Or see this region's nucleotide sequence