Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0804 and Shew_0805 overlap by 4 nucleotides Shew_0805 and Shew_0806 overlap by 11 nucleotides Shew_0806 and Shew_0807 are separated by 748 nucleotides
Shew_0804: Shew_0804 - two component transcriptional regulator (RefSeq), at 917,298 to 918,002
_0804
Shew_0805: Shew_0805 - hypothetical protein (RefSeq), at 917,999 to 918,394
_0805
Shew_0806: Shew_0806 - MltA-interacting MipA family protein (RefSeq), at 918,384 to 919,229
_0806
Shew_0807: Shew_0807 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 919,978 to 925,095
_0807
Position (kb) 918
919
920 Strain fitness (log2 ratio) -1
0
1 at 917.463 kb on - strand, within Shew_0804 at 917.678 kb on + strand, within Shew_0804 at 917.720 kb on + strand, within Shew_0804 at 917.728 kb on - strand, within Shew_0804 at 917.810 kb on + strand, within Shew_0804 at 917.930 kb on + strand, within Shew_0804 at 918.201 kb on - strand, within Shew_0805 at 918.308 kb on - strand, within Shew_0805 at 918.367 kb on + strand at 918.835 kb on - strand, within Shew_0806 at 918.985 kb on + strand, within Shew_0806 at 919.075 kb on + strand, within Shew_0806 at 919.083 kb on + strand, within Shew_0806 at 919.230 kb on - strand at 919.355 kb on - strand at 919.620 kb on + strand at 919.966 kb on + strand at 920.029 kb on + strand at 920.140 kb on - strand at 920.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 917,463 - Shew_0804 0.23 +0.0 917,678 + Shew_0804 0.54 +0.5 917,720 + Shew_0804 0.60 +0.6 917,728 - Shew_0804 0.61 +0.7 917,810 + Shew_0804 0.73 +0.2 917,930 + Shew_0804 0.90 +0.6 918,201 - Shew_0805 0.51 +0.1 918,308 - Shew_0805 0.78 -0.3 918,367 + +0.0 918,835 - Shew_0806 0.53 -0.0 918,985 + Shew_0806 0.71 -1.6 919,075 + Shew_0806 0.82 +0.6 919,083 + Shew_0806 0.83 -0.6 919,230 - +0.2 919,355 - +0.4 919,620 + +0.3 919,966 + +0.2 920,029 + +0.2 920,140 - +0.2 920,140 - +0.2
Or see this region's nucleotide sequence