Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0706 and Shew_0707 are separated by 142 nucleotides Shew_0707 and Shew_0708 are separated by 117 nucleotides
Shew_0706: Shew_0706 - short-chain dehydrogenase/reductase SDR (RefSeq), at 800,542 to 801,219
_0706
Shew_0707: Shew_0707 - YbaK/prolyl-tRNA synthetase associated region (RefSeq), at 801,362 to 801,841
_0707
Shew_0708: Shew_0708 - hypothetical protein (RefSeq), at 801,959 to 802,786
_0708
Position (kb) 801
802
803 Strain fitness (log2 ratio) -1
0
1 at 800.982 kb on + strand, within Shew_0706 at 800.982 kb on + strand, within Shew_0706 at 801.240 kb on + strand at 801.240 kb on + strand at 801.248 kb on - strand at 801.248 kb on - strand at 801.478 kb on + strand, within Shew_0707 at 801.486 kb on - strand, within Shew_0707 at 801.506 kb on - strand, within Shew_0707 at 801.773 kb on + strand, within Shew_0707 at 801.845 kb on - strand at 801.904 kb on - strand at 801.949 kb on + strand at 802.189 kb on - strand, within Shew_0708 at 802.572 kb on + strand, within Shew_0708 at 802.672 kb on + strand, within Shew_0708 at 802.816 kb on + strand at 802.854 kb on - strand at 802.920 kb on + strand at 803.302 kb on + strand at 803.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 800,982 + Shew_0706 0.65 +0.3 800,982 + Shew_0706 0.65 -0.2 801,240 + +0.9 801,240 + +0.6 801,248 - -0.7 801,248 - -0.6 801,478 + Shew_0707 0.24 +0.2 801,486 - Shew_0707 0.26 +0.2 801,506 - Shew_0707 0.30 -0.2 801,773 + Shew_0707 0.86 +0.9 801,845 - -0.3 801,904 - +0.1 801,949 + +0.4 802,189 - Shew_0708 0.28 +0.8 802,572 + Shew_0708 0.74 +0.8 802,672 + Shew_0708 0.86 +0.9 802,816 + +0.4 802,854 - -0.5 802,920 + +1.6 803,302 + -0.5 803,724 + -0.6
Or see this region's nucleotide sequence