Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0672 and Shew_0673 are separated by 8 nucleotides Shew_0673 and Shew_0674 are separated by 98 nucleotides
Shew_0672: Shew_0672 - uroporphyrin-III C-methyltransferase (RefSeq), at 765,289 to 766,110
_0672
Shew_0673: Shew_0673 - hypothetical protein (RefSeq), at 766,119 to 766,955
_0673
Shew_0674: Shew_0674 - major facilitator transporter (RefSeq), at 767,054 to 768,220
_0674
Position (kb) 766
767 Strain fitness (log2 ratio) -2
-1
0
1 at 765.464 kb on + strand, within Shew_0672 at 765.504 kb on - strand, within Shew_0672 at 765.581 kb on - strand, within Shew_0672 at 765.960 kb on + strand, within Shew_0672 at 766.160 kb on - strand at 766.292 kb on + strand, within Shew_0673 at 766.365 kb on + strand, within Shew_0673 at 766.526 kb on - strand, within Shew_0673 at 766.618 kb on + strand, within Shew_0673 at 766.724 kb on - strand, within Shew_0673 at 766.935 kb on - strand at 767.040 kb on - strand at 767.046 kb on + strand at 767.143 kb on - strand at 767.187 kb on + strand, within Shew_0674 at 767.360 kb on - strand, within Shew_0674 at 767.645 kb on + strand, within Shew_0674 at 767.780 kb on + strand, within Shew_0674 at 767.886 kb on - strand, within Shew_0674 at 767.912 kb on + strand, within Shew_0674
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 765,464 + Shew_0672 0.21 -0.9 765,504 - Shew_0672 0.26 -1.9 765,581 - Shew_0672 0.36 -1.1 765,960 + Shew_0672 0.82 -0.1 766,160 - -1.0 766,292 + Shew_0673 0.21 -0.2 766,365 + Shew_0673 0.29 -0.4 766,526 - Shew_0673 0.49 -0.4 766,618 + Shew_0673 0.60 -0.3 766,724 - Shew_0673 0.72 -0.2 766,935 - -0.0 767,040 - +0.1 767,046 + +0.5 767,143 - +0.3 767,187 + Shew_0674 0.11 +0.5 767,360 - Shew_0674 0.26 -0.0 767,645 + Shew_0674 0.51 +0.6 767,780 + Shew_0674 0.62 +0.4 767,886 - Shew_0674 0.71 -0.5 767,912 + Shew_0674 0.74 -0.2
Or see this region's nucleotide sequence