Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sspA and Shew_0574 are separated by 1 nucleotides Shew_0574 and Shew_0575 are separated by 205 nucleotides Shew_0575 and Shew_0576 are separated by 170 nucleotides
Shew_0573: sspA - stringent starvation protein A (RefSeq), at 648,785 to 649,414
sspA
Shew_0574: Shew_0574 - ClpXP protease specificity-enhancing factor (RefSeq), at 649,416 to 649,874
_0574
Shew_0575: Shew_0575 - glutamine amidotransferase of anthranilate synthase (RefSeq), at 650,080 to 650,667
_0575
Shew_0576: Shew_0576 - peptidase S9 prolyl oligopeptidase (RefSeq), at 650,838 to 653,324
_0576
Position (kb) 650
651 Strain fitness (log2 ratio) -1
0
1 at 649.945 kb on - strand at 650.553 kb on - strand, within Shew_0575 at 650.615 kb on + strand at 651.189 kb on + strand, within Shew_0576 at 651.272 kb on - strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.434 kb on + strand, within Shew_0576 at 651.576 kb on + strand, within Shew_0576 at 651.599 kb on + strand, within Shew_0576
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 649,945 - +1.2 650,553 - Shew_0575 0.80 -0.6 650,615 + -0.2 651,189 + Shew_0576 0.14 +0.3 651,272 - Shew_0576 0.17 +0.6 651,434 + Shew_0576 0.24 +0.4 651,434 + Shew_0576 0.24 -0.4 651,434 + Shew_0576 0.24 +0.4 651,576 + Shew_0576 0.30 +0.9 651,599 + Shew_0576 0.31 +0.4
Or see this region's nucleotide sequence