Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0484 and Shew_0485 are separated by 36 nucleotides Shew_0485 and Shew_0486 are separated by 92 nucleotides
Shew_0484: Shew_0484 - hypothetical protein (RefSeq), at 541,500 to 542,771
_0484
Shew_0485: Shew_0485 - cold-shock DNA-binding domain-containing protein (RefSeq), at 542,808 to 543,425
_0485
Shew_0486: Shew_0486 - permease (RefSeq), at 543,518 to 544,534
_0486
Position (kb) 542
543
544 Strain fitness (log2 ratio) -1
0
1 at 541.912 kb on - strand, within Shew_0484 at 542.109 kb on - strand, within Shew_0484 at 542.441 kb on + strand, within Shew_0484 at 542.637 kb on + strand, within Shew_0484 at 542.639 kb on - strand, within Shew_0484 at 542.669 kb on - strand at 542.851 kb on - strand at 543.095 kb on + strand, within Shew_0485 at 543.559 kb on + strand at 543.567 kb on - strand at 543.679 kb on - strand, within Shew_0486 at 543.679 kb on - strand, within Shew_0486 at 543.778 kb on + strand, within Shew_0486 at 544.116 kb on + strand, within Shew_0486 at 544.116 kb on + strand, within Shew_0486 at 544.250 kb on + strand, within Shew_0486 at 544.321 kb on + strand, within Shew_0486 at 544.321 kb on + strand, within Shew_0486 at 544.402 kb on + strand, within Shew_0486 at 544.412 kb on + strand, within Shew_0486
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 541,912 - Shew_0484 0.32 -1.2 542,109 - Shew_0484 0.48 +1.5 542,441 + Shew_0484 0.74 -0.1 542,637 + Shew_0484 0.89 +0.5 542,639 - Shew_0484 0.90 -0.0 542,669 - +0.3 542,851 - +0.2 543,095 + Shew_0485 0.46 -0.6 543,559 + +0.2 543,567 - +0.1 543,679 - Shew_0486 0.16 +0.1 543,679 - Shew_0486 0.16 +0.7 543,778 + Shew_0486 0.26 +0.0 544,116 + Shew_0486 0.59 +0.5 544,116 + Shew_0486 0.59 +0.8 544,250 + Shew_0486 0.72 +0.0 544,321 + Shew_0486 0.79 +0.3 544,321 + Shew_0486 0.79 -0.5 544,402 + Shew_0486 0.87 +0.1 544,412 + Shew_0486 0.88 +1.4
Or see this region's nucleotide sequence