Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_R0026

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0121 and tRNA-Cys are separated by 42 nucleotidestRNA-Cys and Synpcc7942_0122 are separated by 478 nucleotides Synpcc7942_0121: Synpcc7942_0121 - hypothetical protein, at 120,013 to 121,239 _0121 Synpcc7942_R0026: tRNA-Cys - tRNA-Cys, at 121,282 to 121,352 tRNA-Cys Synpcc7942_0122: Synpcc7942_0122 - EAL, at 121,831 to 123,408 _0122 Position (kb) 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 121.254 kb on + strandat 121.399 kb on - strandat 121.410 kb on + strandat 121.418 kb on - strandat 121.496 kb on + strandat 121.837 kb on - strandat 121.837 kb on - strandat 121.841 kb on + strandat 121.841 kb on + strandat 121.849 kb on - strandat 121.910 kb on + strandat 122.136 kb on - strand, within Synpcc7942_0122at 122.218 kb on - strand, within Synpcc7942_0122at 122.249 kb on - strand, within Synpcc7942_0122at 122.272 kb on - strand, within Synpcc7942_0122at 122.279 kb on + strand, within Synpcc7942_0122at 122.311 kb on + strand, within Synpcc7942_0122at 122.311 kb on + strand, within Synpcc7942_0122at 122.317 kb on - strand, within Synpcc7942_0122at 122.319 kb on - strand, within Synpcc7942_0122

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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121,254 + -0.5
121,399 - +2.9
121,410 + +2.7
121,418 - -0.3
121,496 + +0.8
121,837 - +0.8
121,837 - +1.7
121,841 + +0.5
121,841 + +0.6
121,849 - +0.5
121,910 + -2.6
122,136 - Synpcc7942_0122 0.19 -1.3
122,218 - Synpcc7942_0122 0.25 -0.4
122,249 - Synpcc7942_0122 0.26 +2.6
122,272 - Synpcc7942_0122 0.28 -1.0
122,279 + Synpcc7942_0122 0.28 -1.9
122,311 + Synpcc7942_0122 0.30 +0.4
122,311 + Synpcc7942_0122 0.30 +0.4
122,317 - Synpcc7942_0122 0.31 -0.9
122,319 - Synpcc7942_0122 0.31 -3.0

Or see this region's nucleotide sequence