Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt natC and Synpcc7942_1895 are separated by 170 nucleotides Synpcc7942_1895 and argJ are separated by 71 nucleotides
Synpcc7942_1894: natC - integral membrane protein of the ABC-type Nat permease for neutral amino acids, at 1,966,520 to 1,967,599
natC
Synpcc7942_1895: Synpcc7942_1895 - hypothetical protein, at 1,967,770 to 1,968,582
_1895
Synpcc7942_1896: argJ - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein, at 1,968,654 to 1,969,898
argJ
Position (kb) 1967
1968
1969 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 1966.786 kb on + strand at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.815 kb on + strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.823 kb on - strand, within natC at 1966.828 kb on - strand, within natC at 1966.850 kb on + strand, within natC at 1966.855 kb on + strand, within natC at 1966.858 kb on - strand, within natC at 1966.862 kb on + strand, within natC at 1966.863 kb on - strand at 1966.870 kb on - strand, within natC at 1966.872 kb on + strand, within natC at 1966.872 kb on + strand, within natC at 1966.880 kb on - strand, within natC at 1966.880 kb on - strand, within natC at 1966.885 kb on - strand, within natC at 1966.906 kb on + strand, within natC at 1966.943 kb on + strand, within natC at 1967.012 kb on + strand, within natC at 1967.049 kb on + strand, within natC at 1967.050 kb on + strand at 1967.051 kb on + strand, within natC at 1967.087 kb on + strand, within natC at 1967.092 kb on - strand, within natC at 1967.092 kb on - strand, within natC at 1967.095 kb on - strand, within natC at 1967.095 kb on - strand, within natC at 1967.117 kb on + strand, within natC at 1967.140 kb on - strand, within natC at 1967.152 kb on + strand, within natC at 1967.170 kb on - strand, within natC at 1967.180 kb on - strand, within natC at 1967.193 kb on - strand, within natC at 1967.197 kb on + strand, within natC at 1967.221 kb on + strand, within natC at 1967.223 kb on + strand, within natC at 1967.229 kb on - strand, within natC at 1967.231 kb on - strand, within natC at 1967.273 kb on + strand, within natC at 1967.316 kb on - strand, within natC at 1967.316 kb on - strand, within natC at 1967.320 kb on + strand, within natC at 1967.364 kb on - strand, within natC at 1967.366 kb on + strand, within natC at 1967.384 kb on + strand, within natC at 1967.384 kb on + strand, within natC at 1967.392 kb on - strand, within natC at 1967.441 kb on - strand, within natC at 1967.441 kb on - strand at 1967.441 kb on - strand, within natC at 1967.463 kb on - strand, within natC at 1967.463 kb on - strand, within natC at 1967.469 kb on + strand, within natC at 1967.471 kb on - strand, within natC at 1967.477 kb on - strand, within natC at 1967.477 kb on - strand, within natC at 1967.512 kb on + strand at 1967.514 kb on + strand at 1967.514 kb on + strand at 1967.515 kb on + strand at 1967.525 kb on + strand at 1967.536 kb on + strand at 1967.536 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.541 kb on + strand at 1967.544 kb on - strand at 1967.544 kb on - strand at 1967.546 kb on + strand at 1967.546 kb on + strand at 1967.546 kb on + strand at 1967.546 kb on + strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.549 kb on - strand at 1967.576 kb on - strand at 1967.581 kb on + strand at 1967.581 kb on + strand at 1967.581 kb on - strand at 1967.585 kb on + strand at 1967.632 kb on + strand at 1967.633 kb on - strand at 1967.637 kb on + strand at 1967.645 kb on - strand at 1967.659 kb on - strand at 1967.678 kb on + strand at 1967.678 kb on + strand at 1967.706 kb on - strand at 1967.804 kb on + strand at 1967.821 kb on + strand at 1967.824 kb on - strand at 1967.830 kb on - strand at 1967.865 kb on + strand, within Synpcc7942_1895 at 1967.865 kb on + strand, within Synpcc7942_1895 at 1967.870 kb on + strand, within Synpcc7942_1895 at 1967.870 kb on + strand, within Synpcc7942_1895 at 1967.873 kb on + strand, within Synpcc7942_1895 at 1967.873 kb on + strand, within Synpcc7942_1895 at 1967.875 kb on + strand, within Synpcc7942_1895 at 1967.878 kb on - strand, within Synpcc7942_1895 at 1967.878 kb on - strand, within Synpcc7942_1895 at 1967.919 kb on + strand, within Synpcc7942_1895 at 1967.991 kb on - strand, within Synpcc7942_1895 at 1967.999 kb on - strand, within Synpcc7942_1895 at 1968.001 kb on + strand, within Synpcc7942_1895 at 1968.005 kb on + strand, within Synpcc7942_1895 at 1968.009 kb on - strand, within Synpcc7942_1895 at 1968.034 kb on - strand, within Synpcc7942_1895 at 1968.049 kb on - strand, within Synpcc7942_1895 at 1968.054 kb on - strand, within Synpcc7942_1895 at 1968.078 kb on - strand, within Synpcc7942_1895 at 1968.083 kb on - strand, within Synpcc7942_1895 at 1968.145 kb on + strand, within Synpcc7942_1895 at 1968.145 kb on + strand, within Synpcc7942_1895 at 1968.153 kb on - strand, within Synpcc7942_1895 at 1968.189 kb on + strand, within Synpcc7942_1895 at 1968.200 kb on + strand, within Synpcc7942_1895 at 1968.200 kb on + strand, within Synpcc7942_1895 at 1968.208 kb on - strand, within Synpcc7942_1895 at 1968.208 kb on - strand, within Synpcc7942_1895 at 1968.219 kb on + strand, within Synpcc7942_1895 at 1968.291 kb on + strand, within Synpcc7942_1895 at 1968.294 kb on - strand, within Synpcc7942_1895 at 1968.294 kb on - strand, within Synpcc7942_1895 at 1968.299 kb on - strand, within Synpcc7942_1895 at 1968.301 kb on + strand, within Synpcc7942_1895 at 1968.302 kb on + strand, within Synpcc7942_1895 at 1968.306 kb on + strand, within Synpcc7942_1895 at 1968.309 kb on - strand, within Synpcc7942_1895 at 1968.310 kb on - strand, within Synpcc7942_1895 at 1968.310 kb on - strand, within Synpcc7942_1895 at 1968.364 kb on + strand, within Synpcc7942_1895 at 1968.413 kb on + strand, within Synpcc7942_1895 at 1968.482 kb on - strand, within Synpcc7942_1895 at 1968.482 kb on - strand, within Synpcc7942_1895 at 1968.484 kb on + strand, within Synpcc7942_1895 at 1968.493 kb on - strand, within Synpcc7942_1895 at 1968.524 kb on - strand at 1968.528 kb on + strand at 1968.548 kb on + strand at 1968.548 kb on + strand at 1968.549 kb on - strand at 1968.561 kb on + strand at 1968.589 kb on - strand at 1968.589 kb on - strand at 1968.595 kb on + strand at 1968.597 kb on + strand at 1968.603 kb on - strand at 1968.605 kb on - strand at 1968.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,966,786 + -0.1 1,966,815 + natC Synpcc7942_1894 0.27 -0.9 1,966,815 + natC Synpcc7942_1894 0.27 +0.1 1,966,815 + natC Synpcc7942_1894 0.27 -0.3 1,966,815 + natC Synpcc7942_1894 0.27 -0.4 1,966,815 + natC Synpcc7942_1894 0.27 -2.3 1,966,815 + natC Synpcc7942_1894 0.27 -1.8 1,966,815 + natC Synpcc7942_1894 0.27 -0.6 1,966,815 + natC Synpcc7942_1894 0.27 +0.9 1,966,815 + natC Synpcc7942_1894 0.27 -2.4 1,966,815 + natC Synpcc7942_1894 0.27 +0.2 1,966,815 + natC Synpcc7942_1894 0.27 -0.7 1,966,815 + natC Synpcc7942_1894 0.27 +1.0 1,966,823 - natC Synpcc7942_1894 0.28 +1.1 1,966,823 - natC Synpcc7942_1894 0.28 +0.0 1,966,823 - natC Synpcc7942_1894 0.28 +0.2 1,966,823 - natC Synpcc7942_1894 0.28 -0.9 1,966,823 - natC Synpcc7942_1894 0.28 +1.9 1,966,823 - natC Synpcc7942_1894 0.28 +1.9 1,966,823 - natC Synpcc7942_1894 0.28 +1.3 1,966,828 - natC Synpcc7942_1894 0.29 -0.4 1,966,850 + natC Synpcc7942_1894 0.31 +0.6 1,966,855 + natC Synpcc7942_1894 0.31 -2.3 1,966,858 - natC Synpcc7942_1894 0.31 -1.1 1,966,862 + natC Synpcc7942_1894 0.32 -0.4 1,966,863 - +1.6 1,966,870 - natC Synpcc7942_1894 0.32 -1.7 1,966,872 + natC Synpcc7942_1894 0.33 +0.6 1,966,872 + natC Synpcc7942_1894 0.33 +1.4 1,966,880 - natC Synpcc7942_1894 0.33 -0.1 1,966,880 - natC Synpcc7942_1894 0.33 -1.9 1,966,885 - natC Synpcc7942_1894 0.34 +3.7 1,966,906 + natC Synpcc7942_1894 0.36 -1.7 1,966,943 + natC Synpcc7942_1894 0.39 +3.2 1,967,012 + natC Synpcc7942_1894 0.46 +0.1 1,967,049 + natC Synpcc7942_1894 0.49 -0.1 1,967,050 + +0.9 1,967,051 + natC Synpcc7942_1894 0.49 -1.6 1,967,087 + natC Synpcc7942_1894 0.53 -1.0 1,967,092 - natC Synpcc7942_1894 0.53 +1.2 1,967,092 - natC Synpcc7942_1894 0.53 -0.2 1,967,095 - natC Synpcc7942_1894 0.53 +1.1 1,967,095 - natC Synpcc7942_1894 0.53 -0.7 1,967,117 + natC Synpcc7942_1894 0.55 +1.4 1,967,140 - natC Synpcc7942_1894 0.57 +1.0 1,967,152 + natC Synpcc7942_1894 0.59 +3.4 1,967,170 - natC Synpcc7942_1894 0.60 +0.5 1,967,180 - natC Synpcc7942_1894 0.61 -0.3 1,967,193 - natC Synpcc7942_1894 0.62 +1.1 1,967,197 + natC Synpcc7942_1894 0.63 +0.9 1,967,221 + natC Synpcc7942_1894 0.65 +3.0 1,967,223 + natC Synpcc7942_1894 0.65 -2.1 1,967,229 - natC Synpcc7942_1894 0.66 -1.0 1,967,231 - natC Synpcc7942_1894 0.66 -2.0 1,967,273 + natC Synpcc7942_1894 0.70 +0.9 1,967,316 - natC Synpcc7942_1894 0.74 +1.4 1,967,316 - natC Synpcc7942_1894 0.74 +1.1 1,967,320 + natC Synpcc7942_1894 0.74 -2.8 1,967,364 - natC Synpcc7942_1894 0.78 -0.9 1,967,366 + natC Synpcc7942_1894 0.78 +0.6 1,967,384 + natC Synpcc7942_1894 0.80 -0.3 1,967,384 + natC Synpcc7942_1894 0.80 -4.0 1,967,392 - natC Synpcc7942_1894 0.81 -1.3 1,967,441 - natC Synpcc7942_1894 0.85 -0.1 1,967,441 - -0.4 1,967,441 - natC Synpcc7942_1894 0.85 -2.2 1,967,463 - natC Synpcc7942_1894 0.87 +0.3 1,967,463 - natC Synpcc7942_1894 0.87 -1.9 1,967,469 + natC Synpcc7942_1894 0.88 +0.1 1,967,471 - natC Synpcc7942_1894 0.88 -0.5 1,967,477 - natC Synpcc7942_1894 0.89 +0.2 1,967,477 - natC Synpcc7942_1894 0.89 -1.0 1,967,512 + -0.5 1,967,514 + +0.6 1,967,514 + +1.0 1,967,515 + +0.9 1,967,525 + +3.0 1,967,536 + -1.7 1,967,536 + -0.7 1,967,541 + +0.9 1,967,541 + -2.0 1,967,541 + +0.5 1,967,541 + -1.1 1,967,541 + +0.4 1,967,544 - -1.1 1,967,544 - -3.8 1,967,546 + +0.2 1,967,546 + -2.9 1,967,546 + +2.7 1,967,546 + +0.6 1,967,549 - -2.8 1,967,549 - +1.9 1,967,549 - -1.2 1,967,549 - -0.4 1,967,549 - -1.2 1,967,549 - +3.2 1,967,549 - -0.2 1,967,576 - +0.2 1,967,581 + -1.6 1,967,581 + -3.1 1,967,581 - +0.1 1,967,585 + -0.6 1,967,632 + -2.3 1,967,633 - -0.9 1,967,637 + +0.3 1,967,645 - -1.5 1,967,659 - +1.3 1,967,678 + +1.5 1,967,678 + +0.3 1,967,706 - -0.9 1,967,804 + -1.3 1,967,821 + -2.8 1,967,824 - -1.9 1,967,830 - -1.3 1,967,865 + Synpcc7942_1895 0.12 -3.3 1,967,865 + Synpcc7942_1895 0.12 -0.6 1,967,870 + Synpcc7942_1895 0.12 -4.3 1,967,870 + Synpcc7942_1895 0.12 -2.7 1,967,873 + Synpcc7942_1895 0.13 -3.8 1,967,873 + Synpcc7942_1895 0.13 -0.6 1,967,875 + Synpcc7942_1895 0.13 -3.3 1,967,878 - Synpcc7942_1895 0.13 -2.0 1,967,878 - Synpcc7942_1895 0.13 -2.6 1,967,919 + Synpcc7942_1895 0.18 +0.1 1,967,991 - Synpcc7942_1895 0.27 -1.2 1,967,999 - Synpcc7942_1895 0.28 -4.6 1,968,001 + Synpcc7942_1895 0.28 -5.9 1,968,005 + Synpcc7942_1895 0.29 -0.4 1,968,009 - Synpcc7942_1895 0.29 -1.9 1,968,034 - Synpcc7942_1895 0.32 -1.4 1,968,049 - Synpcc7942_1895 0.34 -2.3 1,968,054 - Synpcc7942_1895 0.35 -2.3 1,968,078 - Synpcc7942_1895 0.38 -4.9 1,968,083 - Synpcc7942_1895 0.38 -0.1 1,968,145 + Synpcc7942_1895 0.46 -2.0 1,968,145 + Synpcc7942_1895 0.46 -2.0 1,968,153 - Synpcc7942_1895 0.47 -2.6 1,968,189 + Synpcc7942_1895 0.52 -3.0 1,968,200 + Synpcc7942_1895 0.53 -1.1 1,968,200 + Synpcc7942_1895 0.53 -0.7 1,968,208 - Synpcc7942_1895 0.54 -3.4 1,968,208 - Synpcc7942_1895 0.54 -3.5 1,968,219 + Synpcc7942_1895 0.55 -3.6 1,968,291 + Synpcc7942_1895 0.64 -1.3 1,968,294 - Synpcc7942_1895 0.64 -2.9 1,968,294 - Synpcc7942_1895 0.64 -2.6 1,968,299 - Synpcc7942_1895 0.65 -3.2 1,968,301 + Synpcc7942_1895 0.65 -4.7 1,968,302 + Synpcc7942_1895 0.65 -2.1 1,968,306 + Synpcc7942_1895 0.66 -0.7 1,968,309 - Synpcc7942_1895 0.66 -3.7 1,968,310 - Synpcc7942_1895 0.66 -1.1 1,968,310 - Synpcc7942_1895 0.66 -4.0 1,968,364 + Synpcc7942_1895 0.73 -3.7 1,968,413 + Synpcc7942_1895 0.79 -4.1 1,968,482 - Synpcc7942_1895 0.88 -0.3 1,968,482 - Synpcc7942_1895 0.88 -2.8 1,968,484 + Synpcc7942_1895 0.88 +1.7 1,968,493 - Synpcc7942_1895 0.89 +1.7 1,968,524 - -1.0 1,968,528 + -2.5 1,968,548 + +0.8 1,968,548 + -1.7 1,968,549 - +3.3 1,968,561 + -2.0 1,968,589 - -0.1 1,968,589 - +2.8 1,968,595 + -0.7 1,968,597 + +0.3 1,968,603 - -0.1 1,968,605 - -3.3 1,968,607 + +1.1
Or see this region's nucleotide sequence