Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1730 and Synpcc7942_1731 are separated by 45 nucleotides Synpcc7942_1731 and Synpcc7942_1732 overlap by 4 nucleotides Synpcc7942_1732 and sufR overlap by 4 nucleotides sufR and ftrC are separated by 175 nucleotides ftrC and sufB are separated by 47 nucleotides
Synpcc7942_1730: Synpcc7942_1730 - hypothetical protein, at 1,802,050 to 1,802,640
_1730
Synpcc7942_1731: Synpcc7942_1731 - hypothetical protein, at 1,802,686 to 1,803,171
_1731
Synpcc7942_1732: Synpcc7942_1732 - hypothetical protein, at 1,803,168 to 1,803,578
_1732
Synpcc7942_1733: sufR - transcriptional regulator, at 1,803,575 to 1,804,219
sufR
Synpcc7942_1734: ftrC - ferredoxin-thioredoxin reductase catalytic chain, at 1,804,395 to 1,804,757
ftrC
Synpcc7942_1735: sufB - cysteine desulfurase activator complex subunit SufB, at 1,804,805 to 1,806,244
sufB
Position (kb) 1803
1804
1805 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 1802.624 kb on + strand at 1802.624 kb on + strand at 1802.624 kb on + strand at 1802.624 kb on + strand at 1802.632 kb on - strand at 1802.632 kb on - strand at 1802.632 kb on - strand at 1802.634 kb on + strand at 1802.635 kb on + strand at 1802.635 kb on + strand at 1802.635 kb on + strand at 1802.635 kb on + strand at 1802.640 kb on + strand at 1802.643 kb on - strand at 1802.643 kb on - strand at 1802.643 kb on - strand at 1802.645 kb on + strand at 1802.655 kb on - strand at 1802.665 kb on - strand at 1802.665 kb on - strand at 1802.675 kb on - strand at 1802.691 kb on - strand at 1802.720 kb on - strand at 1802.736 kb on + strand, within Synpcc7942_1731 at 1802.737 kb on - strand, within Synpcc7942_1731 at 1802.737 kb on - strand, within Synpcc7942_1731 at 1802.737 kb on - strand, within Synpcc7942_1731 at 1802.748 kb on + strand, within Synpcc7942_1731 at 1802.759 kb on + strand, within Synpcc7942_1731 at 1802.797 kb on + strand, within Synpcc7942_1731 at 1802.802 kb on - strand, within Synpcc7942_1731 at 1802.815 kb on - strand, within Synpcc7942_1731 at 1802.824 kb on - strand, within Synpcc7942_1731 at 1802.906 kb on + strand, within Synpcc7942_1731 at 1802.906 kb on + strand, within Synpcc7942_1731 at 1802.906 kb on + strand, within Synpcc7942_1731 at 1802.939 kb on + strand, within Synpcc7942_1731 at 1802.944 kb on + strand, within Synpcc7942_1731 at 1802.944 kb on + strand, within Synpcc7942_1731 at 1802.944 kb on + strand, within Synpcc7942_1731 at 1802.952 kb on - strand, within Synpcc7942_1731 at 1802.952 kb on - strand, within Synpcc7942_1731 at 1802.952 kb on - strand, within Synpcc7942_1731 at 1802.952 kb on - strand, within Synpcc7942_1731 at 1802.954 kb on + strand, within Synpcc7942_1731 at 1802.981 kb on + strand, within Synpcc7942_1731 at 1802.981 kb on + strand, within Synpcc7942_1731 at 1802.981 kb on + strand, within Synpcc7942_1731 at 1802.981 kb on + strand, within Synpcc7942_1731 at 1803.067 kb on + strand, within Synpcc7942_1731 at 1803.067 kb on + strand, within Synpcc7942_1731 at 1803.075 kb on - strand, within Synpcc7942_1731 at 1803.085 kb on + strand, within Synpcc7942_1731 at 1803.085 kb on + strand, within Synpcc7942_1731 at 1803.089 kb on + strand, within Synpcc7942_1731 at 1803.093 kb on - strand, within Synpcc7942_1731 at 1803.137 kb on - strand at 1803.137 kb on - strand at 1803.137 kb on - strand at 1803.146 kb on + strand at 1803.154 kb on - strand at 1803.167 kb on - strand at 1803.253 kb on + strand, within Synpcc7942_1732 at 1803.284 kb on - strand, within Synpcc7942_1732 at 1803.287 kb on + strand, within Synpcc7942_1732 at 1803.297 kb on + strand, within Synpcc7942_1732 at 1803.305 kb on - strand, within Synpcc7942_1732 at 1803.307 kb on - strand, within Synpcc7942_1732 at 1803.313 kb on - strand, within Synpcc7942_1732 at 1803.318 kb on - strand, within Synpcc7942_1732 at 1803.354 kb on + strand, within Synpcc7942_1732 at 1803.361 kb on - strand, within Synpcc7942_1732 at 1803.371 kb on + strand, within Synpcc7942_1732 at 1803.394 kb on + strand, within Synpcc7942_1732 at 1803.394 kb on + strand, within Synpcc7942_1732 at 1803.394 kb on + strand, within Synpcc7942_1732 at 1803.432 kb on + strand, within Synpcc7942_1732 at 1803.444 kb on + strand, within Synpcc7942_1732 at 1803.451 kb on + strand at 1803.452 kb on - strand, within Synpcc7942_1732 at 1803.452 kb on - strand, within Synpcc7942_1732 at 1803.453 kb on - strand, within Synpcc7942_1732 at 1803.498 kb on + strand, within Synpcc7942_1732 at 1803.510 kb on + strand, within Synpcc7942_1732 at 1803.510 kb on + strand, within Synpcc7942_1732 at 1803.518 kb on - strand, within Synpcc7942_1732 at 1803.518 kb on - strand, within Synpcc7942_1732 at 1803.518 kb on - strand, within Synpcc7942_1732 at 1803.539 kb on + strand at 1803.539 kb on + strand at 1803.539 kb on + strand at 1803.539 kb on + strand at 1803.539 kb on + strand at 1803.547 kb on - strand at 1803.547 kb on - strand at 1803.547 kb on - strand at 1803.566 kb on + strand at 1803.585 kb on + strand at 1803.587 kb on - strand at 1803.606 kb on - strand at 1803.608 kb on + strand at 1803.613 kb on + strand at 1803.640 kb on + strand, within sufR at 1803.648 kb on - strand, within sufR at 1803.648 kb on - strand, within sufR at 1803.648 kb on - strand, within sufR at 1803.681 kb on - strand, within sufR at 1803.681 kb on - strand, within sufR at 1803.731 kb on + strand, within sufR at 1803.731 kb on + strand, within sufR at 1803.737 kb on - strand, within sufR at 1803.737 kb on - strand, within sufR at 1803.739 kb on - strand, within sufR at 1803.739 kb on - strand, within sufR at 1803.760 kb on + strand, within sufR at 1803.809 kb on + strand, within sufR at 1803.819 kb on + strand, within sufR at 1803.856 kb on - strand, within sufR at 1803.856 kb on - strand, within sufR at 1803.856 kb on - strand, within sufR at 1803.872 kb on + strand, within sufR at 1803.898 kb on - strand, within sufR at 1803.907 kb on - strand, within sufR at 1803.908 kb on - strand, within sufR at 1803.926 kb on + strand, within sufR at 1804.033 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.034 kb on + strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand, within sufR at 1804.042 kb on - strand at 1804.073 kb on - strand, within sufR at 1804.121 kb on + strand, within sufR at 1804.126 kb on + strand, within sufR at 1804.141 kb on + strand, within sufR at 1804.146 kb on + strand, within sufR at 1804.146 kb on + strand, within sufR at 1804.149 kb on - strand, within sufR at 1804.149 kb on - strand, within sufR at 1804.202 kb on + strand at 1804.203 kb on - strand at 1804.203 kb on - strand at 1804.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,802,624 + -1.4 1,802,624 + -1.3 1,802,624 + -1.4 1,802,624 + +0.7 1,802,632 - +1.6 1,802,632 - -0.7 1,802,632 - +0.8 1,802,634 + -1.3 1,802,635 + -0.5 1,802,635 + -0.4 1,802,635 + +0.0 1,802,635 + +1.4 1,802,640 + -0.6 1,802,643 - +1.4 1,802,643 - +0.9 1,802,643 - +1.1 1,802,645 + -2.5 1,802,655 - -0.4 1,802,665 - +1.3 1,802,665 - -0.7 1,802,675 - -3.4 1,802,691 - +0.9 1,802,720 - -1.7 1,802,736 + Synpcc7942_1731 0.10 +0.3 1,802,737 - Synpcc7942_1731 0.10 -2.5 1,802,737 - Synpcc7942_1731 0.10 +1.5 1,802,737 - Synpcc7942_1731 0.10 -1.5 1,802,748 + Synpcc7942_1731 0.13 +2.7 1,802,759 + Synpcc7942_1731 0.15 +1.3 1,802,797 + Synpcc7942_1731 0.23 +0.3 1,802,802 - Synpcc7942_1731 0.24 -0.4 1,802,815 - Synpcc7942_1731 0.27 -0.5 1,802,824 - Synpcc7942_1731 0.28 -0.5 1,802,906 + Synpcc7942_1731 0.45 -0.9 1,802,906 + Synpcc7942_1731 0.45 -0.4 1,802,906 + Synpcc7942_1731 0.45 +1.8 1,802,939 + Synpcc7942_1731 0.52 +0.6 1,802,944 + Synpcc7942_1731 0.53 +2.3 1,802,944 + Synpcc7942_1731 0.53 +0.3 1,802,944 + Synpcc7942_1731 0.53 -0.8 1,802,952 - Synpcc7942_1731 0.55 -0.2 1,802,952 - Synpcc7942_1731 0.55 +1.4 1,802,952 - Synpcc7942_1731 0.55 +1.3 1,802,952 - Synpcc7942_1731 0.55 -0.7 1,802,954 + Synpcc7942_1731 0.55 -2.7 1,802,981 + Synpcc7942_1731 0.61 +0.0 1,802,981 + Synpcc7942_1731 0.61 -0.6 1,802,981 + Synpcc7942_1731 0.61 +0.1 1,802,981 + Synpcc7942_1731 0.61 +0.7 1,803,067 + Synpcc7942_1731 0.78 -0.1 1,803,067 + Synpcc7942_1731 0.78 +3.6 1,803,075 - Synpcc7942_1731 0.80 -1.9 1,803,085 + Synpcc7942_1731 0.82 -3.2 1,803,085 + Synpcc7942_1731 0.82 +0.8 1,803,089 + Synpcc7942_1731 0.83 -0.9 1,803,093 - Synpcc7942_1731 0.84 -1.5 1,803,137 - -1.9 1,803,137 - +3.7 1,803,137 - -0.2 1,803,146 + -1.2 1,803,154 - +0.9 1,803,167 - -0.4 1,803,253 + Synpcc7942_1732 0.21 -3.8 1,803,284 - Synpcc7942_1732 0.28 -0.8 1,803,287 + Synpcc7942_1732 0.29 -2.1 1,803,297 + Synpcc7942_1732 0.31 -0.3 1,803,305 - Synpcc7942_1732 0.33 +0.2 1,803,307 - Synpcc7942_1732 0.34 +1.4 1,803,313 - Synpcc7942_1732 0.35 -1.1 1,803,318 - Synpcc7942_1732 0.36 -2.9 1,803,354 + Synpcc7942_1732 0.45 -1.6 1,803,361 - Synpcc7942_1732 0.47 +2.9 1,803,371 + Synpcc7942_1732 0.49 +0.2 1,803,394 + Synpcc7942_1732 0.55 -3.0 1,803,394 + Synpcc7942_1732 0.55 +0.1 1,803,394 + Synpcc7942_1732 0.55 -1.0 1,803,432 + Synpcc7942_1732 0.64 +0.1 1,803,444 + Synpcc7942_1732 0.67 +3.1 1,803,451 + -1.5 1,803,452 - Synpcc7942_1732 0.69 +0.3 1,803,452 - Synpcc7942_1732 0.69 +3.0 1,803,453 - Synpcc7942_1732 0.69 -0.4 1,803,498 + Synpcc7942_1732 0.80 -1.8 1,803,510 + Synpcc7942_1732 0.83 +3.0 1,803,510 + Synpcc7942_1732 0.83 -0.9 1,803,518 - Synpcc7942_1732 0.85 -3.6 1,803,518 - Synpcc7942_1732 0.85 -0.1 1,803,518 - Synpcc7942_1732 0.85 -1.4 1,803,539 + +3.1 1,803,539 + -0.6 1,803,539 + -3.0 1,803,539 + -1.7 1,803,539 + +0.2 1,803,547 - +1.4 1,803,547 - +1.5 1,803,547 - +1.8 1,803,566 + -0.4 1,803,585 + +2.7 1,803,587 - +1.2 1,803,606 - -2.5 1,803,608 + +2.0 1,803,613 + -2.5 1,803,640 + sufR Synpcc7942_1733 0.10 -5.6 1,803,648 - sufR Synpcc7942_1733 0.11 -1.7 1,803,648 - sufR Synpcc7942_1733 0.11 -3.0 1,803,648 - sufR Synpcc7942_1733 0.11 -2.6 1,803,681 - sufR Synpcc7942_1733 0.16 -0.9 1,803,681 - sufR Synpcc7942_1733 0.16 -0.4 1,803,731 + sufR Synpcc7942_1733 0.24 +0.1 1,803,731 + sufR Synpcc7942_1733 0.24 -1.5 1,803,737 - sufR Synpcc7942_1733 0.25 -2.6 1,803,737 - sufR Synpcc7942_1733 0.25 -1.5 1,803,739 - sufR Synpcc7942_1733 0.25 -2.1 1,803,739 - sufR Synpcc7942_1733 0.25 -2.7 1,803,760 + sufR Synpcc7942_1733 0.29 -3.9 1,803,809 + sufR Synpcc7942_1733 0.36 -1.5 1,803,819 + sufR Synpcc7942_1733 0.38 -3.7 1,803,856 - sufR Synpcc7942_1733 0.44 -1.2 1,803,856 - sufR Synpcc7942_1733 0.44 -1.0 1,803,856 - sufR Synpcc7942_1733 0.44 -4.5 1,803,872 + sufR Synpcc7942_1733 0.46 -0.6 1,803,898 - sufR Synpcc7942_1733 0.50 -0.4 1,803,907 - sufR Synpcc7942_1733 0.51 -1.4 1,803,908 - sufR Synpcc7942_1733 0.52 -1.5 1,803,926 + sufR Synpcc7942_1733 0.54 -2.9 1,804,033 + sufR Synpcc7942_1733 0.71 -0.8 1,804,034 + sufR Synpcc7942_1733 0.71 -0.6 1,804,034 + sufR Synpcc7942_1733 0.71 -3.5 1,804,034 + sufR Synpcc7942_1733 0.71 +0.4 1,804,034 + sufR Synpcc7942_1733 0.71 -2.9 1,804,034 + sufR Synpcc7942_1733 0.71 -0.6 1,804,034 + sufR Synpcc7942_1733 0.71 -1.0 1,804,034 + sufR Synpcc7942_1733 0.71 -1.3 1,804,034 + sufR Synpcc7942_1733 0.71 -2.7 1,804,034 + sufR Synpcc7942_1733 0.71 -3.3 1,804,034 + sufR Synpcc7942_1733 0.71 -2.8 1,804,034 + sufR Synpcc7942_1733 0.71 -2.2 1,804,034 + sufR Synpcc7942_1733 0.71 -1.9 1,804,034 + sufR Synpcc7942_1733 0.71 -3.0 1,804,042 - sufR Synpcc7942_1733 0.72 -3.0 1,804,042 - sufR Synpcc7942_1733 0.72 -2.0 1,804,042 - sufR Synpcc7942_1733 0.72 -2.3 1,804,042 - sufR Synpcc7942_1733 0.72 -2.4 1,804,042 - sufR Synpcc7942_1733 0.72 -1.3 1,804,042 - sufR Synpcc7942_1733 0.72 -1.3 1,804,042 - -1.0 1,804,042 - sufR Synpcc7942_1733 0.72 -4.1 1,804,042 - sufR Synpcc7942_1733 0.72 -1.2 1,804,042 - sufR Synpcc7942_1733 0.72 -2.4 1,804,042 - sufR Synpcc7942_1733 0.72 -2.8 1,804,042 - -0.6 1,804,073 - sufR Synpcc7942_1733 0.77 -2.1 1,804,121 + sufR Synpcc7942_1733 0.85 -0.4 1,804,126 + sufR Synpcc7942_1733 0.85 -1.5 1,804,141 + sufR Synpcc7942_1733 0.88 -0.6 1,804,146 + sufR Synpcc7942_1733 0.89 +0.4 1,804,146 + sufR Synpcc7942_1733 0.89 -0.9 1,804,149 - sufR Synpcc7942_1733 0.89 -1.3 1,804,149 - sufR Synpcc7942_1733 0.89 -2.5 1,804,202 + -1.0 1,804,203 - -0.2 1,804,203 - -1.3 1,804,759 - +0.1
Or see this region's nucleotide sequence