Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1716 and glcF are separated by 68 nucleotides glcF and glcE are separated by 2 nucleotides
Synpcc7942_1716: Synpcc7942_1716 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,783,939 to 1,787,655
_1716
Synpcc7942_1717: glcF - glycolate oxidase subunit (Fe-S) protein, at 1,787,724 to 1,789,025
glcF
Synpcc7942_1718: glcE - glycolate oxidase subunit GlcE, at 1,789,028 to 1,790,305
glcE
Position (kb) 1787
1788
1789
1790 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 1786.728 kb on - strand, within Synpcc7942_1716 at 1786.748 kb on + strand, within Synpcc7942_1716 at 1786.798 kb on - strand, within Synpcc7942_1716 at 1786.855 kb on + strand, within Synpcc7942_1716 at 1786.860 kb on + strand, within Synpcc7942_1716 at 1786.861 kb on + strand, within Synpcc7942_1716 at 1786.861 kb on + strand, within Synpcc7942_1716 at 1786.861 kb on + strand, within Synpcc7942_1716 at 1786.861 kb on + strand, within Synpcc7942_1716 at 1786.861 kb on + strand, within Synpcc7942_1716 at 1786.861 kb on + strand, within Synpcc7942_1716 at 1786.861 kb on + strand, within Synpcc7942_1716 at 1786.869 kb on - strand, within Synpcc7942_1716 at 1786.887 kb on - strand, within Synpcc7942_1716 at 1786.903 kb on + strand, within Synpcc7942_1716 at 1786.917 kb on - strand, within Synpcc7942_1716 at 1786.938 kb on + strand, within Synpcc7942_1716 at 1786.938 kb on + strand, within Synpcc7942_1716 at 1786.946 kb on - strand, within Synpcc7942_1716 at 1786.959 kb on + strand, within Synpcc7942_1716 at 1786.960 kb on - strand at 1787.043 kb on - strand, within Synpcc7942_1716 at 1787.083 kb on + strand, within Synpcc7942_1716 at 1787.084 kb on + strand, within Synpcc7942_1716 at 1787.104 kb on - strand, within Synpcc7942_1716 at 1787.135 kb on + strand, within Synpcc7942_1716 at 1787.154 kb on - strand, within Synpcc7942_1716 at 1787.156 kb on - strand, within Synpcc7942_1716 at 1787.157 kb on - strand, within Synpcc7942_1716 at 1787.159 kb on + strand, within Synpcc7942_1716 at 1787.159 kb on + strand, within Synpcc7942_1716 at 1787.160 kb on - strand, within Synpcc7942_1716 at 1787.233 kb on - strand, within Synpcc7942_1716 at 1787.295 kb on - strand at 1787.322 kb on + strand at 1787.331 kb on - strand at 1787.340 kb on + strand at 1787.341 kb on + strand at 1787.371 kb on + strand at 1787.382 kb on + strand at 1787.511 kb on + strand at 1787.517 kb on + strand at 1787.518 kb on - strand at 1787.555 kb on + strand at 1787.569 kb on - strand at 1787.648 kb on - strand at 1787.648 kb on - strand at 1787.648 kb on - strand at 1787.648 kb on - strand at 1787.692 kb on - strand at 1787.730 kb on - strand at 1787.777 kb on - strand at 1787.955 kb on - strand, within glcF at 1787.978 kb on + strand, within glcF at 1787.978 kb on + strand, within glcF at 1788.083 kb on + strand, within glcF at 1788.100 kb on + strand, within glcF at 1788.111 kb on - strand, within glcF at 1788.166 kb on - strand, within glcF at 1788.179 kb on + strand, within glcF at 1788.226 kb on - strand, within glcF at 1788.279 kb on + strand, within glcF at 1788.294 kb on + strand, within glcF at 1788.316 kb on + strand, within glcF at 1788.351 kb on + strand, within glcF at 1788.359 kb on + strand, within glcF at 1788.369 kb on + strand, within glcF at 1788.374 kb on + strand at 1788.447 kb on + strand, within glcF at 1788.447 kb on + strand, within glcF at 1788.447 kb on + strand, within glcF at 1788.455 kb on - strand, within glcF at 1788.455 kb on - strand, within glcF at 1788.475 kb on + strand, within glcF at 1788.491 kb on + strand, within glcF at 1788.512 kb on + strand, within glcF at 1788.527 kb on + strand, within glcF at 1788.527 kb on + strand, within glcF at 1788.535 kb on - strand, within glcF at 1788.535 kb on - strand, within glcF at 1788.536 kb on - strand, within glcF at 1788.536 kb on - strand, within glcF at 1788.619 kb on - strand, within glcF at 1788.619 kb on - strand, within glcF at 1788.627 kb on + strand, within glcF at 1788.659 kb on + strand, within glcF at 1788.667 kb on - strand, within glcF at 1788.672 kb on - strand, within glcF at 1788.672 kb on - strand, within glcF at 1788.709 kb on + strand, within glcF at 1788.709 kb on + strand at 1788.716 kb on + strand, within glcF at 1788.717 kb on - strand, within glcF at 1788.728 kb on + strand, within glcF at 1788.791 kb on + strand, within glcF at 1788.847 kb on - strand, within glcF at 1788.851 kb on + strand, within glcF at 1788.859 kb on - strand, within glcF at 1788.859 kb on - strand, within glcF at 1788.866 kb on + strand, within glcF at 1788.874 kb on + strand, within glcF at 1788.874 kb on - strand, within glcF at 1788.874 kb on - strand, within glcF at 1788.874 kb on - strand, within glcF at 1788.926 kb on - strand at 1788.932 kb on + strand at 1788.932 kb on + strand at 1788.932 kb on + strand at 1788.932 kb on + strand at 1788.932 kb on + strand at 1788.940 kb on - strand at 1788.940 kb on - strand at 1788.940 kb on - strand at 1788.940 kb on - strand at 1788.940 kb on - strand at 1788.940 kb on - strand at 1788.977 kb on + strand at 1788.985 kb on - strand at 1788.985 kb on - strand at 1789.033 kb on + strand at 1789.033 kb on + strand at 1789.033 kb on + strand at 1789.041 kb on - strand at 1789.041 kb on - strand at 1789.041 kb on - strand at 1789.073 kb on - strand at 1789.073 kb on - strand at 1789.073 kb on - strand at 1789.073 kb on - strand at 1789.123 kb on - strand at 1789.128 kb on - strand at 1789.132 kb on - strand at 1789.226 kb on + strand, within glcE at 1789.234 kb on - strand, within glcE at 1789.260 kb on + strand, within glcE at 1789.300 kb on - strand, within glcE at 1789.300 kb on - strand, within glcE at 1789.300 kb on - strand, within glcE at 1789.323 kb on - strand, within glcE at 1789.365 kb on - strand, within glcE at 1789.401 kb on - strand, within glcE at 1789.445 kb on + strand, within glcE at 1789.484 kb on - strand, within glcE at 1789.503 kb on - strand, within glcE at 1789.513 kb on + strand, within glcE at 1789.531 kb on - strand, within glcE at 1789.549 kb on + strand, within glcE at 1789.580 kb on - strand, within glcE at 1789.580 kb on - strand, within glcE at 1789.590 kb on - strand, within glcE at 1789.604 kb on - strand at 1789.677 kb on + strand, within glcE at 1789.685 kb on - strand, within glcE at 1789.685 kb on - strand, within glcE at 1789.687 kb on + strand, within glcE at 1789.728 kb on - strand, within glcE at 1789.740 kb on + strand, within glcE at 1789.740 kb on + strand, within glcE at 1789.785 kb on + strand, within glcE at 1789.797 kb on + strand, within glcE at 1789.797 kb on + strand, within glcE at 1789.798 kb on + strand, within glcE at 1789.798 kb on - strand, within glcE at 1789.805 kb on - strand, within glcE at 1789.886 kb on - strand, within glcE at 1789.914 kb on + strand, within glcE at 1789.924 kb on + strand, within glcE at 1789.936 kb on + strand, within glcE at 1789.936 kb on + strand, within glcE at 1789.944 kb on - strand, within glcE at 1789.944 kb on - strand, within glcE at 1789.948 kb on + strand, within glcE at 1789.949 kb on + strand, within glcE at 1789.992 kb on - strand, within glcE at 1790.000 kb on + strand, within glcE
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,786,728 - Synpcc7942_1716 0.75 -0.7 1,786,748 + Synpcc7942_1716 0.76 +0.3 1,786,798 - Synpcc7942_1716 0.77 +2.1 1,786,855 + Synpcc7942_1716 0.78 +3.5 1,786,860 + Synpcc7942_1716 0.79 +3.2 1,786,861 + Synpcc7942_1716 0.79 -0.6 1,786,861 + Synpcc7942_1716 0.79 +2.4 1,786,861 + Synpcc7942_1716 0.79 +1.7 1,786,861 + Synpcc7942_1716 0.79 +2.5 1,786,861 + Synpcc7942_1716 0.79 +0.4 1,786,861 + Synpcc7942_1716 0.79 +1.8 1,786,861 + Synpcc7942_1716 0.79 -0.2 1,786,869 - Synpcc7942_1716 0.79 +2.4 1,786,887 - Synpcc7942_1716 0.79 -0.1 1,786,903 + Synpcc7942_1716 0.80 -1.7 1,786,917 - Synpcc7942_1716 0.80 +3.2 1,786,938 + Synpcc7942_1716 0.81 +5.3 1,786,938 + Synpcc7942_1716 0.81 -1.9 1,786,946 - Synpcc7942_1716 0.81 +2.9 1,786,959 + Synpcc7942_1716 0.81 +3.7 1,786,960 - +4.2 1,787,043 - Synpcc7942_1716 0.84 +2.9 1,787,083 + Synpcc7942_1716 0.85 +0.1 1,787,084 + Synpcc7942_1716 0.85 +0.8 1,787,104 - Synpcc7942_1716 0.85 +1.4 1,787,135 + Synpcc7942_1716 0.86 +3.2 1,787,154 - Synpcc7942_1716 0.86 +5.0 1,787,156 - Synpcc7942_1716 0.87 -0.7 1,787,157 - Synpcc7942_1716 0.87 +1.0 1,787,159 + Synpcc7942_1716 0.87 -0.7 1,787,159 + Synpcc7942_1716 0.87 +2.1 1,787,160 - Synpcc7942_1716 0.87 +0.7 1,787,233 - Synpcc7942_1716 0.89 +1.6 1,787,295 - +3.2 1,787,322 + +2.2 1,787,331 - +3.4 1,787,340 + +2.1 1,787,341 + -0.6 1,787,371 + +2.1 1,787,382 + -0.3 1,787,511 + +1.4 1,787,517 + +1.5 1,787,518 - +1.5 1,787,555 + +0.8 1,787,569 - +2.7 1,787,648 - +2.8 1,787,648 - +0.4 1,787,648 - +0.4 1,787,648 - +1.9 1,787,692 - +0.4 1,787,730 - -1.7 1,787,777 - -1.4 1,787,955 - glcF Synpcc7942_1717 0.18 -1.4 1,787,978 + glcF Synpcc7942_1717 0.20 -1.5 1,787,978 + glcF Synpcc7942_1717 0.20 -0.7 1,788,083 + glcF Synpcc7942_1717 0.28 -0.9 1,788,100 + glcF Synpcc7942_1717 0.29 -0.4 1,788,111 - glcF Synpcc7942_1717 0.30 -1.5 1,788,166 - glcF Synpcc7942_1717 0.34 -1.7 1,788,179 + glcF Synpcc7942_1717 0.35 -0.4 1,788,226 - glcF Synpcc7942_1717 0.39 -2.2 1,788,279 + glcF Synpcc7942_1717 0.43 -0.7 1,788,294 + glcF Synpcc7942_1717 0.44 -2.1 1,788,316 + glcF Synpcc7942_1717 0.45 -1.4 1,788,351 + glcF Synpcc7942_1717 0.48 -0.3 1,788,359 + glcF Synpcc7942_1717 0.49 -1.6 1,788,369 + glcF Synpcc7942_1717 0.50 -1.9 1,788,374 + -0.4 1,788,447 + glcF Synpcc7942_1717 0.56 -2.7 1,788,447 + glcF Synpcc7942_1717 0.56 -1.0 1,788,447 + glcF Synpcc7942_1717 0.56 -2.3 1,788,455 - glcF Synpcc7942_1717 0.56 +2.0 1,788,455 - glcF Synpcc7942_1717 0.56 -3.1 1,788,475 + glcF Synpcc7942_1717 0.58 -2.4 1,788,491 + glcF Synpcc7942_1717 0.59 -4.0 1,788,512 + glcF Synpcc7942_1717 0.61 -1.9 1,788,527 + glcF Synpcc7942_1717 0.62 -2.3 1,788,527 + glcF Synpcc7942_1717 0.62 +0.4 1,788,535 - glcF Synpcc7942_1717 0.62 -2.4 1,788,535 - glcF Synpcc7942_1717 0.62 -1.8 1,788,536 - glcF Synpcc7942_1717 0.62 -1.0 1,788,536 - glcF Synpcc7942_1717 0.62 -2.6 1,788,619 - glcF Synpcc7942_1717 0.69 -2.7 1,788,619 - glcF Synpcc7942_1717 0.69 -4.0 1,788,627 + glcF Synpcc7942_1717 0.69 -2.3 1,788,659 + glcF Synpcc7942_1717 0.72 +1.2 1,788,667 - glcF Synpcc7942_1717 0.72 -0.7 1,788,672 - glcF Synpcc7942_1717 0.73 -0.9 1,788,672 - glcF Synpcc7942_1717 0.73 -0.6 1,788,709 + glcF Synpcc7942_1717 0.76 -2.0 1,788,709 + -1.0 1,788,716 + glcF Synpcc7942_1717 0.76 -1.7 1,788,717 - glcF Synpcc7942_1717 0.76 -2.0 1,788,728 + glcF Synpcc7942_1717 0.77 -3.3 1,788,791 + glcF Synpcc7942_1717 0.82 -2.7 1,788,847 - glcF Synpcc7942_1717 0.86 -1.5 1,788,851 + glcF Synpcc7942_1717 0.87 -1.0 1,788,859 - glcF Synpcc7942_1717 0.87 +0.4 1,788,859 - glcF Synpcc7942_1717 0.87 -1.2 1,788,866 + glcF Synpcc7942_1717 0.88 -3.0 1,788,874 + glcF Synpcc7942_1717 0.88 +0.2 1,788,874 - glcF Synpcc7942_1717 0.88 -2.9 1,788,874 - glcF Synpcc7942_1717 0.88 +1.1 1,788,874 - glcF Synpcc7942_1717 0.88 +0.8 1,788,926 - -2.0 1,788,932 + +1.7 1,788,932 + -1.2 1,788,932 + -1.7 1,788,932 + -2.1 1,788,932 + -2.3 1,788,940 - +0.6 1,788,940 - -2.2 1,788,940 - -1.5 1,788,940 - -2.3 1,788,940 - -1.0 1,788,940 - -0.6 1,788,977 + -1.4 1,788,985 - -1.0 1,788,985 - -0.9 1,789,033 + +0.4 1,789,033 + -0.7 1,789,033 + -0.4 1,789,041 - -2.3 1,789,041 - +0.3 1,789,041 - -2.0 1,789,073 - -0.6 1,789,073 - -0.9 1,789,073 - -1.7 1,789,073 - -0.0 1,789,123 - -2.6 1,789,128 - -2.0 1,789,132 - -1.2 1,789,226 + glcE Synpcc7942_1718 0.15 -2.5 1,789,234 - glcE Synpcc7942_1718 0.16 -1.6 1,789,260 + glcE Synpcc7942_1718 0.18 -4.1 1,789,300 - glcE Synpcc7942_1718 0.21 -0.7 1,789,300 - glcE Synpcc7942_1718 0.21 +1.6 1,789,300 - glcE Synpcc7942_1718 0.21 -0.7 1,789,323 - glcE Synpcc7942_1718 0.23 +0.4 1,789,365 - glcE Synpcc7942_1718 0.26 -0.4 1,789,401 - glcE Synpcc7942_1718 0.29 -3.2 1,789,445 + glcE Synpcc7942_1718 0.33 -1.0 1,789,484 - glcE Synpcc7942_1718 0.36 +0.1 1,789,503 - glcE Synpcc7942_1718 0.37 -3.4 1,789,513 + glcE Synpcc7942_1718 0.38 +0.4 1,789,531 - glcE Synpcc7942_1718 0.39 -2.1 1,789,549 + glcE Synpcc7942_1718 0.41 -1.0 1,789,580 - glcE Synpcc7942_1718 0.43 -1.6 1,789,580 - glcE Synpcc7942_1718 0.43 -1.7 1,789,590 - glcE Synpcc7942_1718 0.44 +0.7 1,789,604 - -0.2 1,789,677 + glcE Synpcc7942_1718 0.51 +0.4 1,789,685 - glcE Synpcc7942_1718 0.51 +0.7 1,789,685 - glcE Synpcc7942_1718 0.51 -1.0 1,789,687 + glcE Synpcc7942_1718 0.52 +0.6 1,789,728 - glcE Synpcc7942_1718 0.55 -2.4 1,789,740 + glcE Synpcc7942_1718 0.56 -2.2 1,789,740 + glcE Synpcc7942_1718 0.56 -1.2 1,789,785 + glcE Synpcc7942_1718 0.59 +0.4 1,789,797 + glcE Synpcc7942_1718 0.60 +0.7 1,789,797 + glcE Synpcc7942_1718 0.60 +0.1 1,789,798 + glcE Synpcc7942_1718 0.60 +0.2 1,789,798 - glcE Synpcc7942_1718 0.60 -2.2 1,789,805 - glcE Synpcc7942_1718 0.61 +0.9 1,789,886 - glcE Synpcc7942_1718 0.67 -1.5 1,789,914 + glcE Synpcc7942_1718 0.69 -1.2 1,789,924 + glcE Synpcc7942_1718 0.70 -2.5 1,789,936 + glcE Synpcc7942_1718 0.71 +0.1 1,789,936 + glcE Synpcc7942_1718 0.71 -0.7 1,789,944 - glcE Synpcc7942_1718 0.72 -2.2 1,789,944 - glcE Synpcc7942_1718 0.72 +1.0 1,789,948 + glcE Synpcc7942_1718 0.72 -1.7 1,789,949 + glcE Synpcc7942_1718 0.72 -0.9 1,789,992 - glcE Synpcc7942_1718 0.75 +2.8 1,790,000 + glcE Synpcc7942_1718 0.76 -1.4
Or see this region's nucleotide sequence