Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1644 and rnpB are separated by 168 nucleotides rnpB and rnc are separated by 34 nucleotides rnc and Synpcc7942_1646 are separated by 272 nucleotides
Synpcc7942_1644: Synpcc7942_1644 - hypothetical protein, at 1,712,014 to 1,712,817
_1644
Synpcc7942_R0036: rnpB - RNA component of RNaseP, at 1,712,986 to 1,713,297
rnpB
Synpcc7942_1645: rnc - RNAse III, at 1,713,332 to 1,714,075
rnc
Synpcc7942_1646: Synpcc7942_1646 - hypothetical protein, at 1,714,348 to 1,715,070
_1646
Position (kb) 1713
1714
1715 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 1712.352 kb on + strand, within Synpcc7942_1644 at 1712.357 kb on + strand, within Synpcc7942_1644 at 1712.360 kb on - strand, within Synpcc7942_1644 at 1712.388 kb on + strand, within Synpcc7942_1644 at 1712.404 kb on + strand at 1712.426 kb on - strand, within Synpcc7942_1644 at 1712.427 kb on + strand, within Synpcc7942_1644 at 1712.451 kb on - strand, within Synpcc7942_1644 at 1712.526 kb on + strand, within Synpcc7942_1644 at 1712.534 kb on - strand, within Synpcc7942_1644 at 1712.534 kb on - strand, within Synpcc7942_1644 at 1712.534 kb on - strand, within Synpcc7942_1644 at 1712.534 kb on - strand, within Synpcc7942_1644 at 1712.601 kb on - strand, within Synpcc7942_1644 at 1712.607 kb on - strand, within Synpcc7942_1644 at 1712.619 kb on + strand, within Synpcc7942_1644 at 1712.621 kb on + strand, within Synpcc7942_1644 at 1712.627 kb on - strand, within Synpcc7942_1644 at 1712.687 kb on + strand, within Synpcc7942_1644 at 1712.687 kb on + strand, within Synpcc7942_1644 at 1712.690 kb on - strand, within Synpcc7942_1644 at 1712.720 kb on - strand, within Synpcc7942_1644 at 1712.731 kb on + strand, within Synpcc7942_1644 at 1712.731 kb on + strand, within Synpcc7942_1644 at 1712.739 kb on - strand at 1712.739 kb on - strand at 1712.762 kb on + strand at 1712.777 kb on + strand at 1712.777 kb on + strand at 1712.785 kb on - strand at 1712.840 kb on + strand at 1712.847 kb on - strand at 1712.858 kb on + strand at 1712.859 kb on - strand at 1712.866 kb on - strand at 1712.874 kb on - strand at 1712.874 kb on - strand at 1712.883 kb on + strand at 1712.884 kb on + strand at 1712.916 kb on + strand at 1712.916 kb on + strand at 1712.919 kb on - strand at 1712.931 kb on - strand at 1713.321 kb on - strand at 1713.321 kb on - strand at 1713.336 kb on - strand at 1713.378 kb on + strand at 1713.466 kb on - strand, within rnc at 1713.469 kb on + strand, within rnc at 1713.479 kb on + strand, within rnc at 1713.516 kb on + strand, within rnc at 1713.529 kb on - strand, within rnc at 1713.529 kb on - strand, within rnc at 1713.545 kb on - strand, within rnc at 1713.556 kb on + strand, within rnc at 1713.559 kb on + strand, within rnc at 1713.567 kb on + strand, within rnc at 1713.568 kb on - strand, within rnc at 1713.575 kb on - strand, within rnc at 1713.585 kb on + strand, within rnc at 1713.590 kb on + strand, within rnc at 1713.597 kb on + strand, within rnc at 1713.643 kb on + strand, within rnc at 1713.647 kb on + strand, within rnc at 1713.656 kb on - strand, within rnc at 1713.670 kb on + strand, within rnc at 1713.671 kb on + strand at 1713.679 kb on - strand, within rnc at 1713.683 kb on + strand, within rnc at 1713.701 kb on + strand, within rnc at 1713.744 kb on - strand, within rnc at 1713.746 kb on + strand, within rnc at 1713.750 kb on + strand, within rnc at 1713.750 kb on + strand, within rnc at 1713.758 kb on - strand, within rnc at 1713.760 kb on + strand, within rnc at 1713.760 kb on + strand, within rnc at 1713.768 kb on - strand, within rnc at 1713.789 kb on - strand, within rnc at 1713.789 kb on - strand, within rnc at 1713.823 kb on + strand, within rnc at 1713.826 kb on - strand, within rnc at 1713.834 kb on - strand, within rnc at 1713.847 kb on + strand, within rnc at 1713.847 kb on + strand, within rnc at 1713.847 kb on + strand, within rnc at 1713.847 kb on + strand, within rnc at 1713.847 kb on + strand, within rnc at 1713.847 kb on + strand, within rnc at 1713.847 kb on + strand, within rnc at 1713.855 kb on - strand, within rnc at 1713.855 kb on - strand, within rnc at 1713.860 kb on - strand, within rnc at 1713.868 kb on - strand, within rnc at 1713.868 kb on - strand, within rnc at 1713.870 kb on + strand, within rnc at 1713.906 kb on + strand, within rnc at 1713.914 kb on - strand, within rnc at 1713.914 kb on - strand, within rnc at 1713.919 kb on + strand, within rnc at 1713.933 kb on - strand, within rnc at 1714.013 kb on + strand at 1714.047 kb on + strand at 1714.160 kb on - strand at 1714.267 kb on - strand at 1714.277 kb on + strand at 1714.277 kb on + strand at 1714.277 kb on + strand at 1714.284 kb on + strand at 1714.285 kb on - strand at 1714.285 kb on - strand at 1714.285 kb on - strand at 1714.285 kb on - strand at 1714.292 kb on - strand at 1714.296 kb on + strand at 1714.296 kb on + strand at 1714.296 kb on + strand at 1714.296 kb on + strand at 1714.296 kb on + strand at 1714.304 kb on - strand at 1714.324 kb on + strand at 1714.330 kb on - strand at 1714.330 kb on - strand at 1714.375 kb on - strand at 1714.394 kb on - strand at 1714.401 kb on + strand at 1714.409 kb on - strand at 1714.411 kb on + strand at 1714.411 kb on + strand at 1714.527 kb on - strand, within Synpcc7942_1646 at 1714.591 kb on + strand, within Synpcc7942_1646 at 1714.591 kb on + strand, within Synpcc7942_1646 at 1714.591 kb on + strand, within Synpcc7942_1646 at 1714.591 kb on + strand, within Synpcc7942_1646 at 1714.599 kb on - strand, within Synpcc7942_1646 at 1714.599 kb on - strand, within Synpcc7942_1646 at 1714.599 kb on - strand, within Synpcc7942_1646 at 1714.599 kb on - strand, within Synpcc7942_1646 at 1714.712 kb on - strand, within Synpcc7942_1646 at 1714.712 kb on - strand, within Synpcc7942_1646 at 1714.713 kb on - strand, within Synpcc7942_1646 at 1714.740 kb on - strand, within Synpcc7942_1646 at 1714.741 kb on + strand, within Synpcc7942_1646 at 1714.742 kb on + strand, within Synpcc7942_1646 at 1714.742 kb on + strand, within Synpcc7942_1646 at 1714.763 kb on + strand, within Synpcc7942_1646 at 1714.764 kb on + strand, within Synpcc7942_1646 at 1714.769 kb on + strand, within Synpcc7942_1646 at 1714.785 kb on - strand, within Synpcc7942_1646 at 1714.793 kb on - strand, within Synpcc7942_1646 at 1714.793 kb on - strand, within Synpcc7942_1646 at 1714.856 kb on + strand, within Synpcc7942_1646 at 1714.874 kb on - strand, within Synpcc7942_1646 at 1714.874 kb on - strand, within Synpcc7942_1646 at 1714.898 kb on + strand, within Synpcc7942_1646 at 1715.001 kb on + strand at 1715.009 kb on - strand at 1715.012 kb on - strand at 1715.014 kb on - strand at 1715.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,712,352 + Synpcc7942_1644 0.42 +1.7 1,712,357 + Synpcc7942_1644 0.43 -0.8 1,712,360 - Synpcc7942_1644 0.43 -0.5 1,712,388 + Synpcc7942_1644 0.47 -1.4 1,712,404 + -0.6 1,712,426 - Synpcc7942_1644 0.51 -1.5 1,712,427 + Synpcc7942_1644 0.51 -1.2 1,712,451 - Synpcc7942_1644 0.54 +2.6 1,712,526 + Synpcc7942_1644 0.64 +0.2 1,712,534 - Synpcc7942_1644 0.65 +0.6 1,712,534 - Synpcc7942_1644 0.65 -0.9 1,712,534 - Synpcc7942_1644 0.65 -0.2 1,712,534 - Synpcc7942_1644 0.65 +0.4 1,712,601 - Synpcc7942_1644 0.73 -0.5 1,712,607 - Synpcc7942_1644 0.74 +0.5 1,712,619 + Synpcc7942_1644 0.75 +2.4 1,712,621 + Synpcc7942_1644 0.75 -1.0 1,712,627 - Synpcc7942_1644 0.76 -2.0 1,712,687 + Synpcc7942_1644 0.84 -4.2 1,712,687 + Synpcc7942_1644 0.84 -1.0 1,712,690 - Synpcc7942_1644 0.84 -1.2 1,712,720 - Synpcc7942_1644 0.88 -1.6 1,712,731 + Synpcc7942_1644 0.89 -0.7 1,712,731 + Synpcc7942_1644 0.89 +0.8 1,712,739 - +3.3 1,712,739 - -0.5 1,712,762 + -1.0 1,712,777 + +1.4 1,712,777 + +1.0 1,712,785 - -1.2 1,712,840 + +1.5 1,712,847 - -3.5 1,712,858 + -1.7 1,712,859 - +0.3 1,712,866 - -1.2 1,712,874 - -1.5 1,712,874 - +0.2 1,712,883 + +0.2 1,712,884 + -1.9 1,712,916 + -1.6 1,712,916 + +0.3 1,712,919 - -1.4 1,712,931 - -0.1 1,713,321 - +1.4 1,713,321 - +0.7 1,713,336 - +0.9 1,713,378 + -2.4 1,713,466 - rnc Synpcc7942_1645 0.18 +3.1 1,713,469 + rnc Synpcc7942_1645 0.18 +1.8 1,713,479 + rnc Synpcc7942_1645 0.20 -0.4 1,713,516 + rnc Synpcc7942_1645 0.25 +1.3 1,713,529 - rnc Synpcc7942_1645 0.26 -1.8 1,713,529 - rnc Synpcc7942_1645 0.26 -0.1 1,713,545 - rnc Synpcc7942_1645 0.29 -0.2 1,713,556 + rnc Synpcc7942_1645 0.30 +0.7 1,713,559 + rnc Synpcc7942_1645 0.31 -1.8 1,713,567 + rnc Synpcc7942_1645 0.32 -0.1 1,713,568 - rnc Synpcc7942_1645 0.32 +0.7 1,713,575 - rnc Synpcc7942_1645 0.33 +3.8 1,713,585 + rnc Synpcc7942_1645 0.34 +3.9 1,713,590 + rnc Synpcc7942_1645 0.35 -1.0 1,713,597 + rnc Synpcc7942_1645 0.36 +1.0 1,713,643 + rnc Synpcc7942_1645 0.42 +4.8 1,713,647 + rnc Synpcc7942_1645 0.42 +6.3 1,713,656 - rnc Synpcc7942_1645 0.44 +5.5 1,713,670 + rnc Synpcc7942_1645 0.45 +3.9 1,713,671 + -0.1 1,713,679 - rnc Synpcc7942_1645 0.47 +4.9 1,713,683 + rnc Synpcc7942_1645 0.47 +1.2 1,713,701 + rnc Synpcc7942_1645 0.50 +3.5 1,713,744 - rnc Synpcc7942_1645 0.55 -0.6 1,713,746 + rnc Synpcc7942_1645 0.56 +2.5 1,713,750 + rnc Synpcc7942_1645 0.56 +2.2 1,713,750 + rnc Synpcc7942_1645 0.56 -0.2 1,713,758 - rnc Synpcc7942_1645 0.57 +0.4 1,713,760 + rnc Synpcc7942_1645 0.58 -0.8 1,713,760 + rnc Synpcc7942_1645 0.58 -1.0 1,713,768 - rnc Synpcc7942_1645 0.59 +4.4 1,713,789 - rnc Synpcc7942_1645 0.61 +2.5 1,713,789 - rnc Synpcc7942_1645 0.61 -0.3 1,713,823 + rnc Synpcc7942_1645 0.66 +5.3 1,713,826 - rnc Synpcc7942_1645 0.66 -0.7 1,713,834 - rnc Synpcc7942_1645 0.67 -0.7 1,713,847 + rnc Synpcc7942_1645 0.69 +4.1 1,713,847 + rnc Synpcc7942_1645 0.69 +4.4 1,713,847 + rnc Synpcc7942_1645 0.69 +0.4 1,713,847 + rnc Synpcc7942_1645 0.69 +1.6 1,713,847 + rnc Synpcc7942_1645 0.69 +4.7 1,713,847 + rnc Synpcc7942_1645 0.69 +0.8 1,713,847 + rnc Synpcc7942_1645 0.69 +1.9 1,713,855 - rnc Synpcc7942_1645 0.70 +2.5 1,713,855 - rnc Synpcc7942_1645 0.70 +0.9 1,713,860 - rnc Synpcc7942_1645 0.71 +1.2 1,713,868 - rnc Synpcc7942_1645 0.72 +2.2 1,713,868 - rnc Synpcc7942_1645 0.72 +1.5 1,713,870 + rnc Synpcc7942_1645 0.72 -0.5 1,713,906 + rnc Synpcc7942_1645 0.77 +0.2 1,713,914 - rnc Synpcc7942_1645 0.78 +0.9 1,713,914 - rnc Synpcc7942_1645 0.78 +1.7 1,713,919 + rnc Synpcc7942_1645 0.79 +3.3 1,713,933 - rnc Synpcc7942_1645 0.81 +0.7 1,714,013 + +1.2 1,714,047 + +0.4 1,714,160 - +1.4 1,714,267 - -0.8 1,714,277 + +0.2 1,714,277 + -1.3 1,714,277 + -0.8 1,714,284 + -1.4 1,714,285 - +0.3 1,714,285 - -1.1 1,714,285 - -1.7 1,714,285 - -2.7 1,714,292 - +0.5 1,714,296 + -1.4 1,714,296 + -0.3 1,714,296 + -1.0 1,714,296 + -1.0 1,714,296 + -2.1 1,714,304 - +2.1 1,714,324 + -0.4 1,714,330 - +0.7 1,714,330 - -0.1 1,714,375 - -2.3 1,714,394 - -0.6 1,714,401 + -1.0 1,714,409 - -3.6 1,714,411 + +0.9 1,714,411 + -0.8 1,714,527 - Synpcc7942_1646 0.25 -0.7 1,714,591 + Synpcc7942_1646 0.34 +1.9 1,714,591 + Synpcc7942_1646 0.34 +0.2 1,714,591 + Synpcc7942_1646 0.34 +1.5 1,714,591 + Synpcc7942_1646 0.34 -0.3 1,714,599 - Synpcc7942_1646 0.35 -0.2 1,714,599 - Synpcc7942_1646 0.35 -2.6 1,714,599 - Synpcc7942_1646 0.35 +0.7 1,714,599 - Synpcc7942_1646 0.35 -2.8 1,714,712 - Synpcc7942_1646 0.50 +2.7 1,714,712 - Synpcc7942_1646 0.50 +2.6 1,714,713 - Synpcc7942_1646 0.50 -0.5 1,714,740 - Synpcc7942_1646 0.54 -1.5 1,714,741 + Synpcc7942_1646 0.54 +0.2 1,714,742 + Synpcc7942_1646 0.54 -0.8 1,714,742 + Synpcc7942_1646 0.54 -3.5 1,714,763 + Synpcc7942_1646 0.57 -1.3 1,714,764 + Synpcc7942_1646 0.58 +0.3 1,714,769 + Synpcc7942_1646 0.58 -0.1 1,714,785 - Synpcc7942_1646 0.60 +0.8 1,714,793 - Synpcc7942_1646 0.62 +1.7 1,714,793 - Synpcc7942_1646 0.62 +2.6 1,714,856 + Synpcc7942_1646 0.70 +0.8 1,714,874 - Synpcc7942_1646 0.73 +1.9 1,714,874 - Synpcc7942_1646 0.73 -0.2 1,714,898 + Synpcc7942_1646 0.76 -0.1 1,715,001 + +0.2 1,715,009 - -1.0 1,715,012 - +0.3 1,715,014 - +1.9 1,715,066 + +0.1
Or see this region's nucleotide sequence