Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1626

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1625 and Synpcc7942_1626 are separated by 146 nucleotidesSynpcc7942_1626 and Synpcc7942_1627 are separated by 3 nucleotides Synpcc7942_1625: Synpcc7942_1625 - probable glycosyltransferase, at 1,693,698 to 1,694,921 _1625 Synpcc7942_1626: Synpcc7942_1626 - hypothetical protein, at 1,695,068 to 1,695,550 _1626 Synpcc7942_1627: Synpcc7942_1627 - hypothetical protein, at 1,695,554 to 1,696,852 _1627 Position (kb) 1695 1696Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1694.072 kb on + strand, within Synpcc7942_1625at 1694.124 kb on + strand, within Synpcc7942_1625at 1694.124 kb on + strand, within Synpcc7942_1625at 1694.147 kb on + strandat 1694.189 kb on + strand, within Synpcc7942_1625at 1694.270 kb on - strand, within Synpcc7942_1625at 1694.314 kb on - strand, within Synpcc7942_1625at 1694.344 kb on + strand, within Synpcc7942_1625at 1694.344 kb on + strand, within Synpcc7942_1625at 1694.387 kb on - strand, within Synpcc7942_1625at 1694.397 kb on - strand, within Synpcc7942_1625at 1694.453 kb on - strand, within Synpcc7942_1625at 1694.505 kb on - strand, within Synpcc7942_1625at 1694.514 kb on + strand, within Synpcc7942_1625at 1694.581 kb on - strand, within Synpcc7942_1625at 1694.583 kb on + strand, within Synpcc7942_1625at 1694.656 kb on - strand, within Synpcc7942_1625at 1694.675 kb on + strand, within Synpcc7942_1625at 1694.683 kb on - strand, within Synpcc7942_1625at 1694.727 kb on + strand, within Synpcc7942_1625at 1694.734 kb on + strandat 1694.734 kb on + strand, within Synpcc7942_1625at 1694.735 kb on + strand, within Synpcc7942_1625at 1694.747 kb on + strand, within Synpcc7942_1625at 1694.747 kb on + strand, within Synpcc7942_1625at 1694.766 kb on - strand, within Synpcc7942_1625at 1694.770 kb on + strand, within Synpcc7942_1625at 1694.778 kb on - strand, within Synpcc7942_1625at 1694.788 kb on + strand, within Synpcc7942_1625at 1694.791 kb on - strand, within Synpcc7942_1625at 1694.833 kb on + strandat 1694.840 kb on + strandat 1694.840 kb on + strandat 1694.841 kb on - strandat 1694.855 kb on - strandat 1694.895 kb on + strandat 1694.924 kb on + strandat 1694.953 kb on + strandat 1694.961 kb on - strandat 1694.961 kb on - strandat 1694.961 kb on - strandat 1694.961 kb on - strandat 1694.974 kb on + strandat 1694.996 kb on + strandat 1694.997 kb on - strandat 1694.997 kb on - strandat 1695.001 kb on + strandat 1695.009 kb on - strandat 1695.035 kb on + strandat 1695.035 kb on + strandat 1695.035 kb on + strandat 1695.035 kb on + strandat 1695.042 kb on + strandat 1695.043 kb on - strandat 1695.045 kb on - strandat 1695.066 kb on + strandat 1695.066 kb on + strandat 1695.066 kb on + strandat 1695.074 kb on - strandat 1695.074 kb on - strandat 1695.076 kb on + strandat 1695.079 kb on - strandat 1695.080 kb on + strandat 1695.106 kb on + strandat 1695.106 kb on + strandat 1695.106 kb on + strandat 1695.114 kb on - strandat 1695.114 kb on - strandat 1695.114 kb on - strandat 1695.114 kb on - strandat 1695.126 kb on - strand, within Synpcc7942_1626at 1695.152 kb on + strand, within Synpcc7942_1626at 1695.160 kb on - strand, within Synpcc7942_1626at 1695.179 kb on - strand, within Synpcc7942_1626at 1695.179 kb on - strand, within Synpcc7942_1626at 1695.221 kb on + strand, within Synpcc7942_1626at 1695.221 kb on + strand, within Synpcc7942_1626at 1695.222 kb on - strand, within Synpcc7942_1626at 1695.222 kb on - strand, within Synpcc7942_1626at 1695.272 kb on - strand, within Synpcc7942_1626at 1695.278 kb on + strand, within Synpcc7942_1626at 1695.284 kb on + strand, within Synpcc7942_1626at 1695.292 kb on - strand, within Synpcc7942_1626at 1695.292 kb on - strand, within Synpcc7942_1626at 1695.292 kb on - strand, within Synpcc7942_1626at 1695.296 kb on + strand, within Synpcc7942_1626at 1695.302 kb on - strand, within Synpcc7942_1626at 1695.308 kb on + strand, within Synpcc7942_1626at 1695.308 kb on + strand, within Synpcc7942_1626at 1695.333 kb on - strand, within Synpcc7942_1626at 1695.348 kb on + strand, within Synpcc7942_1626at 1695.366 kb on - strand, within Synpcc7942_1626at 1695.380 kb on + strand, within Synpcc7942_1626at 1695.383 kb on - strand, within Synpcc7942_1626at 1695.392 kb on + strand, within Synpcc7942_1626at 1695.419 kb on - strand, within Synpcc7942_1626at 1695.455 kb on - strand, within Synpcc7942_1626at 1695.456 kb on + strand, within Synpcc7942_1626at 1695.475 kb on - strand, within Synpcc7942_1626at 1695.485 kb on + strand, within Synpcc7942_1626at 1695.493 kb on - strand, within Synpcc7942_1626at 1695.493 kb on - strand, within Synpcc7942_1626at 1695.513 kb on + strandat 1695.513 kb on + strandat 1695.523 kb on - strandat 1695.523 kb on - strandat 1695.627 kb on - strandat 1695.636 kb on + strandat 1695.639 kb on - strandat 1695.640 kb on - strandat 1695.649 kb on - strandat 1695.656 kb on + strandat 1695.707 kb on - strand, within Synpcc7942_1627at 1695.723 kb on + strandat 1695.733 kb on + strand, within Synpcc7942_1627at 1695.738 kb on + strand, within Synpcc7942_1627at 1695.746 kb on - strand, within Synpcc7942_1627at 1695.756 kb on - strand, within Synpcc7942_1627at 1695.761 kb on + strand, within Synpcc7942_1627at 1695.761 kb on + strand, within Synpcc7942_1627at 1695.761 kb on + strand, within Synpcc7942_1627at 1695.761 kb on + strand, within Synpcc7942_1627at 1695.761 kb on + strand, within Synpcc7942_1627at 1695.764 kb on - strand, within Synpcc7942_1627at 1695.764 kb on - strand, within Synpcc7942_1627at 1695.764 kb on - strand, within Synpcc7942_1627at 1695.769 kb on - strand, within Synpcc7942_1627at 1695.769 kb on - strand, within Synpcc7942_1627at 1695.769 kb on - strand, within Synpcc7942_1627at 1695.769 kb on - strand, within Synpcc7942_1627at 1695.769 kb on - strand, within Synpcc7942_1627at 1695.821 kb on + strand, within Synpcc7942_1627at 1695.826 kb on + strand, within Synpcc7942_1627at 1695.826 kb on + strand, within Synpcc7942_1627at 1695.827 kb on + strand, within Synpcc7942_1627at 1695.835 kb on - strand, within Synpcc7942_1627at 1695.835 kb on - strand, within Synpcc7942_1627at 1695.845 kb on + strand, within Synpcc7942_1627at 1695.852 kb on + strand, within Synpcc7942_1627at 1695.857 kb on + strand, within Synpcc7942_1627at 1695.862 kb on + strand, within Synpcc7942_1627at 1695.879 kb on - strand, within Synpcc7942_1627at 1695.879 kb on - strand, within Synpcc7942_1627at 1695.881 kb on + strand, within Synpcc7942_1627at 1695.927 kb on + strand, within Synpcc7942_1627at 1695.932 kb on - strand, within Synpcc7942_1627at 1695.960 kb on + strand, within Synpcc7942_1627at 1695.971 kb on + strand, within Synpcc7942_1627at 1695.979 kb on - strand, within Synpcc7942_1627at 1695.993 kb on - strand, within Synpcc7942_1627at 1695.993 kb on - strand, within Synpcc7942_1627at 1696.007 kb on + strand, within Synpcc7942_1627at 1696.007 kb on + strand, within Synpcc7942_1627at 1696.028 kb on - strand, within Synpcc7942_1627at 1696.039 kb on - strand, within Synpcc7942_1627at 1696.062 kb on - strand, within Synpcc7942_1627at 1696.063 kb on + strand, within Synpcc7942_1627at 1696.082 kb on + strand, within Synpcc7942_1627at 1696.151 kb on + strand, within Synpcc7942_1627at 1696.165 kb on + strand, within Synpcc7942_1627at 1696.183 kb on + strandat 1696.183 kb on + strand, within Synpcc7942_1627at 1696.191 kb on - strand, within Synpcc7942_1627at 1696.200 kb on + strand, within Synpcc7942_1627at 1696.203 kb on - strand, within Synpcc7942_1627at 1696.211 kb on + strand, within Synpcc7942_1627at 1696.213 kb on - strand, within Synpcc7942_1627at 1696.242 kb on + strand, within Synpcc7942_1627at 1696.298 kb on - strand, within Synpcc7942_1627at 1696.300 kb on + strand, within Synpcc7942_1627at 1696.367 kb on - strand, within Synpcc7942_1627at 1696.378 kb on + strand, within Synpcc7942_1627at 1696.455 kb on - strand, within Synpcc7942_1627at 1696.460 kb on - strand, within Synpcc7942_1627at 1696.492 kb on + strand, within Synpcc7942_1627at 1696.537 kb on - strand, within Synpcc7942_1627

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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1,694,072 + Synpcc7942_1625 0.31 +0.6
1,694,124 + Synpcc7942_1625 0.35 -1.2
1,694,124 + Synpcc7942_1625 0.35 -0.9
1,694,147 + -0.6
1,694,189 + Synpcc7942_1625 0.40 -1.0
1,694,270 - Synpcc7942_1625 0.47 +1.9
1,694,314 - Synpcc7942_1625 0.50 -3.3
1,694,344 + Synpcc7942_1625 0.53 -1.4
1,694,344 + Synpcc7942_1625 0.53 -1.5
1,694,387 - Synpcc7942_1625 0.56 +0.2
1,694,397 - Synpcc7942_1625 0.57 +0.4
1,694,453 - Synpcc7942_1625 0.62 +0.6
1,694,505 - Synpcc7942_1625 0.66 -2.4
1,694,514 + Synpcc7942_1625 0.67 +0.4
1,694,581 - Synpcc7942_1625 0.72 -0.3
1,694,583 + Synpcc7942_1625 0.72 -0.6
1,694,656 - Synpcc7942_1625 0.78 -1.2
1,694,675 + Synpcc7942_1625 0.80 +0.1
1,694,683 - Synpcc7942_1625 0.80 -0.0
1,694,727 + Synpcc7942_1625 0.84 -0.8
1,694,734 + -0.2
1,694,734 + Synpcc7942_1625 0.85 -0.5
1,694,735 + Synpcc7942_1625 0.85 +0.6
1,694,747 + Synpcc7942_1625 0.86 -0.2
1,694,747 + Synpcc7942_1625 0.86 -1.5
1,694,766 - Synpcc7942_1625 0.87 -1.8
1,694,770 + Synpcc7942_1625 0.88 +0.0
1,694,778 - Synpcc7942_1625 0.88 +1.4
1,694,788 + Synpcc7942_1625 0.89 +0.1
1,694,791 - Synpcc7942_1625 0.89 +1.0
1,694,833 + -2.8
1,694,840 + -4.5
1,694,840 + +0.3
1,694,841 - +0.6
1,694,855 - -0.8
1,694,895 + +0.6
1,694,924 + -1.2
1,694,953 + +0.6
1,694,961 - -1.9
1,694,961 - -4.1
1,694,961 - -2.0
1,694,961 - -1.2
1,694,974 + -0.2
1,694,996 + -1.1
1,694,997 - -0.2
1,694,997 - -3.8
1,695,001 + +1.7
1,695,009 - -0.7
1,695,035 + +0.4
1,695,035 + -0.6
1,695,035 + -0.5
1,695,035 + +0.7
1,695,042 + +1.0
1,695,043 - +0.1
1,695,045 - -1.3
1,695,066 + -0.2
1,695,066 + -1.7
1,695,066 + -0.3
1,695,074 - -0.0
1,695,074 - -1.3
1,695,076 + -0.1
1,695,079 - -1.5
1,695,080 + -0.0
1,695,106 + -1.8
1,695,106 + -1.8
1,695,106 + +0.4
1,695,114 - -0.4
1,695,114 - -0.0
1,695,114 - -3.1
1,695,114 - -2.0
1,695,126 - Synpcc7942_1626 0.12 -1.3
1,695,152 + Synpcc7942_1626 0.17 -0.9
1,695,160 - Synpcc7942_1626 0.19 -2.3
1,695,179 - Synpcc7942_1626 0.23 -2.3
1,695,179 - Synpcc7942_1626 0.23 -2.2
1,695,221 + Synpcc7942_1626 0.32 -4.1
1,695,221 + Synpcc7942_1626 0.32 -1.3
1,695,222 - Synpcc7942_1626 0.32 -0.9
1,695,222 - Synpcc7942_1626 0.32 -0.0
1,695,272 - Synpcc7942_1626 0.42 -1.3
1,695,278 + Synpcc7942_1626 0.43 -2.8
1,695,284 + Synpcc7942_1626 0.45 -3.3
1,695,292 - Synpcc7942_1626 0.46 -1.4
1,695,292 - Synpcc7942_1626 0.46 -2.5
1,695,292 - Synpcc7942_1626 0.46 -0.8
1,695,296 + Synpcc7942_1626 0.47 -1.3
1,695,302 - Synpcc7942_1626 0.48 -2.3
1,695,308 + Synpcc7942_1626 0.50 -1.1
1,695,308 + Synpcc7942_1626 0.50 -0.4
1,695,333 - Synpcc7942_1626 0.55 -2.8
1,695,348 + Synpcc7942_1626 0.58 -4.3
1,695,366 - Synpcc7942_1626 0.62 -1.9
1,695,380 + Synpcc7942_1626 0.65 -4.5
1,695,383 - Synpcc7942_1626 0.65 -2.2
1,695,392 + Synpcc7942_1626 0.67 -2.3
1,695,419 - Synpcc7942_1626 0.73 -1.5
1,695,455 - Synpcc7942_1626 0.80 -2.6
1,695,456 + Synpcc7942_1626 0.80 -0.9
1,695,475 - Synpcc7942_1626 0.84 -1.7
1,695,485 + Synpcc7942_1626 0.86 -3.6
1,695,493 - Synpcc7942_1626 0.88 -1.0
1,695,493 - Synpcc7942_1626 0.88 -3.1
1,695,513 + +0.0
1,695,513 + -1.1
1,695,523 - -2.7
1,695,523 - -1.8
1,695,627 - -0.9
1,695,636 + -0.7
1,695,639 - -2.1
1,695,640 - +1.1
1,695,649 - -2.0
1,695,656 + -1.0
1,695,707 - Synpcc7942_1627 0.12 -1.1
1,695,723 + -1.0
1,695,733 + Synpcc7942_1627 0.14 -1.0
1,695,738 + Synpcc7942_1627 0.14 -1.7
1,695,746 - Synpcc7942_1627 0.15 -0.0
1,695,756 - Synpcc7942_1627 0.16 -0.1
1,695,761 + Synpcc7942_1627 0.16 -0.1
1,695,761 + Synpcc7942_1627 0.16 -0.9
1,695,761 + Synpcc7942_1627 0.16 -1.7
1,695,761 + Synpcc7942_1627 0.16 -2.6
1,695,761 + Synpcc7942_1627 0.16 -0.3
1,695,764 - Synpcc7942_1627 0.16 -0.2
1,695,764 - Synpcc7942_1627 0.16 -2.3
1,695,764 - Synpcc7942_1627 0.16 -0.9
1,695,769 - Synpcc7942_1627 0.17 -2.1
1,695,769 - Synpcc7942_1627 0.17 -2.3
1,695,769 - Synpcc7942_1627 0.17 -2.5
1,695,769 - Synpcc7942_1627 0.17 -3.3
1,695,769 - Synpcc7942_1627 0.17 +0.3
1,695,821 + Synpcc7942_1627 0.21 +0.6
1,695,826 + Synpcc7942_1627 0.21 +0.1
1,695,826 + Synpcc7942_1627 0.21 -0.9
1,695,827 + Synpcc7942_1627 0.21 -0.9
1,695,835 - Synpcc7942_1627 0.22 +2.1
1,695,835 - Synpcc7942_1627 0.22 +0.7
1,695,845 + Synpcc7942_1627 0.22 -2.4
1,695,852 + Synpcc7942_1627 0.23 -1.0
1,695,857 + Synpcc7942_1627 0.23 +1.2
1,695,862 + Synpcc7942_1627 0.24 -0.8
1,695,879 - Synpcc7942_1627 0.25 +1.5
1,695,879 - Synpcc7942_1627 0.25 +0.3
1,695,881 + Synpcc7942_1627 0.25 +0.7
1,695,927 + Synpcc7942_1627 0.29 -1.7
1,695,932 - Synpcc7942_1627 0.29 -2.4
1,695,960 + Synpcc7942_1627 0.31 -0.1
1,695,971 + Synpcc7942_1627 0.32 -2.2
1,695,979 - Synpcc7942_1627 0.33 -1.1
1,695,993 - Synpcc7942_1627 0.34 +1.6
1,695,993 - Synpcc7942_1627 0.34 -2.0
1,696,007 + Synpcc7942_1627 0.35 -0.6
1,696,007 + Synpcc7942_1627 0.35 -0.7
1,696,028 - Synpcc7942_1627 0.36 +3.7
1,696,039 - Synpcc7942_1627 0.37 -1.0
1,696,062 - Synpcc7942_1627 0.39 -2.4
1,696,063 + Synpcc7942_1627 0.39 +0.7
1,696,082 + Synpcc7942_1627 0.41 +2.6
1,696,151 + Synpcc7942_1627 0.46 -0.3
1,696,165 + Synpcc7942_1627 0.47 -1.4
1,696,183 + -0.9
1,696,183 + Synpcc7942_1627 0.48 -3.2
1,696,191 - Synpcc7942_1627 0.49 +0.6
1,696,200 + Synpcc7942_1627 0.50 -1.4
1,696,203 - Synpcc7942_1627 0.50 -1.3
1,696,211 + Synpcc7942_1627 0.51 -2.6
1,696,213 - Synpcc7942_1627 0.51 -1.0
1,696,242 + Synpcc7942_1627 0.53 -0.3
1,696,298 - Synpcc7942_1627 0.57 -3.5
1,696,300 + Synpcc7942_1627 0.57 +1.2
1,696,367 - Synpcc7942_1627 0.63 -3.9
1,696,378 + Synpcc7942_1627 0.63 +0.0
1,696,455 - Synpcc7942_1627 0.69 +1.8
1,696,460 - Synpcc7942_1627 0.70 +2.1
1,696,492 + Synpcc7942_1627 0.72 -0.8
1,696,537 - Synpcc7942_1627 0.76 -1.4

Or see this region's nucleotide sequence