Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1528

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1527 and ycf49 are separated by 57 nucleotidesycf49 and Synpcc7942_1529 are separated by 57 nucleotides Synpcc7942_1527: Synpcc7942_1527 - nitrogen assimilation regulatory protein, at 1,586,243 to 1,588,759 _1527 Synpcc7942_1528: ycf49 - conserved hypothetical protein YCF49, at 1,588,817 to 1,589,146 ycf49 Synpcc7942_1529: Synpcc7942_1529 - hypothetical protein, at 1,589,204 to 1,590,223 _1529 Position (kb) 1588 1589 1590Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1587.851 kb on - strand, within Synpcc7942_1527at 1587.861 kb on + strand, within Synpcc7942_1527at 1587.874 kb on + strand, within Synpcc7942_1527at 1587.880 kb on + strand, within Synpcc7942_1527at 1587.950 kb on + strand, within Synpcc7942_1527at 1588.047 kb on - strand, within Synpcc7942_1527at 1588.061 kb on - strand, within Synpcc7942_1527at 1588.067 kb on + strand, within Synpcc7942_1527at 1588.067 kb on + strand, within Synpcc7942_1527at 1588.069 kb on - strand, within Synpcc7942_1527at 1588.075 kb on + strand, within Synpcc7942_1527at 1588.075 kb on - strand, within Synpcc7942_1527at 1588.075 kb on - strand, within Synpcc7942_1527at 1588.075 kb on - strand, within Synpcc7942_1527at 1588.075 kb on - strand, within Synpcc7942_1527at 1588.083 kb on - strand, within Synpcc7942_1527at 1588.091 kb on + strand, within Synpcc7942_1527at 1588.091 kb on + strand, within Synpcc7942_1527at 1588.095 kb on + strand, within Synpcc7942_1527at 1588.099 kb on - strand, within Synpcc7942_1527at 1588.099 kb on - strand, within Synpcc7942_1527at 1588.119 kb on - strand, within Synpcc7942_1527at 1588.128 kb on + strand, within Synpcc7942_1527at 1588.136 kb on - strand, within Synpcc7942_1527at 1588.151 kb on + strand, within Synpcc7942_1527at 1588.157 kb on - strand, within Synpcc7942_1527at 1588.164 kb on - strand, within Synpcc7942_1527at 1588.169 kb on - strand, within Synpcc7942_1527at 1588.175 kb on + strand, within Synpcc7942_1527at 1588.178 kb on + strand, within Synpcc7942_1527at 1588.244 kb on + strand, within Synpcc7942_1527at 1588.247 kb on - strand, within Synpcc7942_1527at 1588.274 kb on - strand, within Synpcc7942_1527at 1588.288 kb on + strand, within Synpcc7942_1527at 1588.288 kb on + strand, within Synpcc7942_1527at 1588.291 kb on - strand, within Synpcc7942_1527at 1588.303 kb on + strand, within Synpcc7942_1527at 1588.304 kb on - strandat 1588.311 kb on - strand, within Synpcc7942_1527at 1588.343 kb on - strand, within Synpcc7942_1527at 1588.367 kb on + strand, within Synpcc7942_1527at 1588.367 kb on + strand, within Synpcc7942_1527at 1588.367 kb on + strand, within Synpcc7942_1527at 1588.370 kb on - strandat 1588.375 kb on - strand, within Synpcc7942_1527at 1588.375 kb on - strand, within Synpcc7942_1527at 1588.408 kb on + strand, within Synpcc7942_1527at 1588.421 kb on + strand, within Synpcc7942_1527at 1588.427 kb on - strand, within Synpcc7942_1527at 1588.429 kb on - strand, within Synpcc7942_1527at 1588.453 kb on + strand, within Synpcc7942_1527at 1588.461 kb on - strand, within Synpcc7942_1527at 1588.461 kb on - strand, within Synpcc7942_1527at 1588.461 kb on - strand, within Synpcc7942_1527at 1588.461 kb on - strand, within Synpcc7942_1527at 1588.482 kb on - strand, within Synpcc7942_1527at 1588.501 kb on - strand, within Synpcc7942_1527at 1588.511 kb on + strandat 1588.515 kb on + strandat 1588.518 kb on - strandat 1588.532 kb on + strandat 1588.532 kb on + strandat 1588.540 kb on - strandat 1588.547 kb on + strandat 1588.547 kb on + strandat 1588.547 kb on + strandat 1588.547 kb on + strandat 1588.547 kb on + strandat 1588.554 kb on + strandat 1588.555 kb on - strandat 1588.555 kb on - strandat 1588.555 kb on - strandat 1588.585 kb on + strandat 1588.585 kb on + strandat 1588.585 kb on + strandat 1588.588 kb on - strandat 1588.590 kb on + strandat 1588.590 kb on + strandat 1588.598 kb on - strandat 1588.598 kb on - strandat 1588.684 kb on + strandat 1588.702 kb on + strandat 1588.707 kb on + strandat 1588.708 kb on + strandat 1588.728 kb on + strandat 1588.754 kb on + strandat 1588.782 kb on + strandat 1588.790 kb on - strandat 1588.790 kb on - strandat 1588.797 kb on - strandat 1588.814 kb on + strandat 1588.822 kb on - strandat 1588.834 kb on - strandat 1588.851 kb on - strand, within ycf49at 1588.885 kb on - strand, within ycf49at 1588.915 kb on + strand, within ycf49at 1588.915 kb on + strand, within ycf49at 1588.915 kb on + strand, within ycf49at 1588.915 kb on + strand, within ycf49at 1588.918 kb on - strand, within ycf49at 1588.923 kb on - strand, within ycf49at 1588.923 kb on - strand, within ycf49at 1588.923 kb on - strand, within ycf49at 1588.943 kb on - strand, within ycf49at 1588.945 kb on + strand, within ycf49at 1588.980 kb on - strand, within ycf49at 1588.981 kb on - strand, within ycf49at 1588.983 kb on + strand, within ycf49at 1588.994 kb on - strand, within ycf49at 1589.000 kb on + strand, within ycf49at 1589.003 kb on - strand, within ycf49at 1589.008 kb on - strand, within ycf49at 1589.008 kb on - strand, within ycf49at 1589.029 kb on + strand, within ycf49at 1589.029 kb on + strand, within ycf49at 1589.029 kb on + strand, within ycf49at 1589.029 kb on + strand, within ycf49at 1589.032 kb on - strand, within ycf49at 1589.037 kb on - strand, within ycf49at 1589.037 kb on - strand, within ycf49at 1589.053 kb on + strand, within ycf49at 1589.078 kb on - strand, within ycf49at 1589.131 kb on + strandat 1589.131 kb on + strandat 1589.150 kb on - strandat 1589.162 kb on - strandat 1589.164 kb on - strandat 1589.166 kb on + strandat 1589.166 kb on + strandat 1589.171 kb on + strandat 1589.172 kb on - strandat 1589.174 kb on - strandat 1589.174 kb on - strandat 1589.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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1,587,851 - Synpcc7942_1527 0.64 +1.2
1,587,861 + Synpcc7942_1527 0.64 -2.1
1,587,874 + Synpcc7942_1527 0.65 -2.0
1,587,880 + Synpcc7942_1527 0.65 -2.8
1,587,950 + Synpcc7942_1527 0.68 +1.9
1,588,047 - Synpcc7942_1527 0.72 -1.2
1,588,061 - Synpcc7942_1527 0.72 +3.5
1,588,067 + Synpcc7942_1527 0.72 -3.8
1,588,067 + Synpcc7942_1527 0.72 -1.8
1,588,069 - Synpcc7942_1527 0.73 -0.9
1,588,075 + Synpcc7942_1527 0.73 -4.6
1,588,075 - Synpcc7942_1527 0.73 -1.1
1,588,075 - Synpcc7942_1527 0.73 +1.5
1,588,075 - Synpcc7942_1527 0.73 -0.9
1,588,075 - Synpcc7942_1527 0.73 +1.7
1,588,083 - Synpcc7942_1527 0.73 +1.8
1,588,091 + Synpcc7942_1527 0.73 -2.2
1,588,091 + Synpcc7942_1527 0.73 -0.4
1,588,095 + Synpcc7942_1527 0.74 -0.7
1,588,099 - Synpcc7942_1527 0.74 -3.3
1,588,099 - Synpcc7942_1527 0.74 -0.0
1,588,119 - Synpcc7942_1527 0.75 -2.2
1,588,128 + Synpcc7942_1527 0.75 -0.8
1,588,136 - Synpcc7942_1527 0.75 -0.5
1,588,151 + Synpcc7942_1527 0.76 -0.9
1,588,157 - Synpcc7942_1527 0.76 +0.1
1,588,164 - Synpcc7942_1527 0.76 -0.9
1,588,169 - Synpcc7942_1527 0.77 -1.9
1,588,175 + Synpcc7942_1527 0.77 -3.3
1,588,178 + Synpcc7942_1527 0.77 -0.1
1,588,244 + Synpcc7942_1527 0.79 +1.8
1,588,247 - Synpcc7942_1527 0.80 -1.5
1,588,274 - Synpcc7942_1527 0.81 +1.9
1,588,288 + Synpcc7942_1527 0.81 -2.0
1,588,288 + Synpcc7942_1527 0.81 -0.1
1,588,291 - Synpcc7942_1527 0.81 -3.4
1,588,303 + Synpcc7942_1527 0.82 +0.7
1,588,304 - -0.7
1,588,311 - Synpcc7942_1527 0.82 +0.6
1,588,343 - Synpcc7942_1527 0.83 -0.2
1,588,367 + Synpcc7942_1527 0.84 +0.3
1,588,367 + Synpcc7942_1527 0.84 -1.1
1,588,367 + Synpcc7942_1527 0.84 +0.8
1,588,370 - -1.1
1,588,375 - Synpcc7942_1527 0.85 -0.4
1,588,375 - Synpcc7942_1527 0.85 -0.1
1,588,408 + Synpcc7942_1527 0.86 -1.2
1,588,421 + Synpcc7942_1527 0.87 -2.7
1,588,427 - Synpcc7942_1527 0.87 -0.4
1,588,429 - Synpcc7942_1527 0.87 +0.3
1,588,453 + Synpcc7942_1527 0.88 +2.4
1,588,461 - Synpcc7942_1527 0.88 -1.1
1,588,461 - Synpcc7942_1527 0.88 -1.3
1,588,461 - Synpcc7942_1527 0.88 -0.4
1,588,461 - Synpcc7942_1527 0.88 -2.1
1,588,482 - Synpcc7942_1527 0.89 +2.5
1,588,501 - Synpcc7942_1527 0.90 +0.6
1,588,511 + -3.7
1,588,515 + -4.5
1,588,518 - -1.5
1,588,532 + -0.7
1,588,532 + -1.9
1,588,540 - -0.2
1,588,547 + +0.7
1,588,547 + -2.1
1,588,547 + -2.0
1,588,547 + -0.3
1,588,547 + -2.8
1,588,554 + -1.0
1,588,555 - -0.5
1,588,555 - -0.5
1,588,555 - -1.9
1,588,585 + -3.6
1,588,585 + -0.9
1,588,585 + -0.5
1,588,588 - -0.9
1,588,590 + +1.5
1,588,590 + -0.2
1,588,598 - +0.5
1,588,598 - -0.1
1,588,684 + -1.7
1,588,702 + +0.9
1,588,707 + -1.4
1,588,708 + +0.9
1,588,728 + +1.8
1,588,754 + -0.3
1,588,782 + +3.5
1,588,790 - -2.1
1,588,790 - -0.5
1,588,797 - -0.9
1,588,814 + -2.7
1,588,822 - -0.7
1,588,834 - -1.4
1,588,851 - ycf49 Synpcc7942_1528 0.10 -2.2
1,588,885 - ycf49 Synpcc7942_1528 0.21 -3.7
1,588,915 + ycf49 Synpcc7942_1528 0.30 +0.1
1,588,915 + ycf49 Synpcc7942_1528 0.30 -2.2
1,588,915 + ycf49 Synpcc7942_1528 0.30 -1.0
1,588,915 + ycf49 Synpcc7942_1528 0.30 +0.1
1,588,918 - ycf49 Synpcc7942_1528 0.31 +1.2
1,588,923 - ycf49 Synpcc7942_1528 0.32 -2.4
1,588,923 - ycf49 Synpcc7942_1528 0.32 +1.1
1,588,923 - ycf49 Synpcc7942_1528 0.32 -3.1
1,588,943 - ycf49 Synpcc7942_1528 0.38 -2.0
1,588,945 + ycf49 Synpcc7942_1528 0.39 +0.8
1,588,980 - ycf49 Synpcc7942_1528 0.49 +0.4
1,588,981 - ycf49 Synpcc7942_1528 0.50 +2.7
1,588,983 + ycf49 Synpcc7942_1528 0.50 -1.5
1,588,994 - ycf49 Synpcc7942_1528 0.54 +1.0
1,589,000 + ycf49 Synpcc7942_1528 0.55 +1.7
1,589,003 - ycf49 Synpcc7942_1528 0.56 +1.0
1,589,008 - ycf49 Synpcc7942_1528 0.58 +3.5
1,589,008 - ycf49 Synpcc7942_1528 0.58 +2.5
1,589,029 + ycf49 Synpcc7942_1528 0.64 +2.0
1,589,029 + ycf49 Synpcc7942_1528 0.64 -1.4
1,589,029 + ycf49 Synpcc7942_1528 0.64 +2.4
1,589,029 + ycf49 Synpcc7942_1528 0.64 +0.2
1,589,032 - ycf49 Synpcc7942_1528 0.65 +0.1
1,589,037 - ycf49 Synpcc7942_1528 0.67 -0.1
1,589,037 - ycf49 Synpcc7942_1528 0.67 -0.3
1,589,053 + ycf49 Synpcc7942_1528 0.72 -4.4
1,589,078 - ycf49 Synpcc7942_1528 0.79 -0.8
1,589,131 + -1.5
1,589,131 + -1.0
1,589,150 - -1.8
1,589,162 - -0.6
1,589,164 - +0.0
1,589,166 + -2.0
1,589,166 + +0.1
1,589,171 + -0.6
1,589,172 - +0.1
1,589,174 - -0.6
1,589,174 - +0.6
1,589,180 - -1.5

Or see this region's nucleotide sequence