Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoC2 and typA are separated by 356 nucleotides typA and Synpcc7942_1526 are separated by 86 nucleotides
Synpcc7942_1524: rpoC2 - DNA-directed RNA polymerase subunit beta', at 1,579,094 to 1,583,050
rpoC2
Synpcc7942_1525: typA - GTP-binding protein TypA, at 1,583,407 to 1,585,200
typA
Synpcc7942_1526: Synpcc7942_1526 - hypothetical protein, at 1,585,287 to 1,586,078
_1526
Position (kb) 1583
1584
1585
1586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 1582.922 kb on - strand at 1582.986 kb on + strand at 1583.053 kb on - strand at 1583.090 kb on - strand at 1583.119 kb on - strand at 1583.199 kb on + strand at 1583.200 kb on + strand at 1583.211 kb on + strand at 1583.211 kb on + strand at 1583.211 kb on + strand at 1583.212 kb on + strand at 1583.218 kb on + strand at 1583.219 kb on - strand at 1583.219 kb on - strand at 1583.219 kb on - strand at 1583.219 kb on - strand at 1583.219 kb on - strand at 1583.220 kb on - strand at 1583.226 kb on - strand at 1583.228 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.279 kb on + strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.287 kb on - strand at 1583.291 kb on + strand at 1583.299 kb on - strand at 1583.370 kb on - strand at 1583.370 kb on - strand at 1583.385 kb on - strand at 1583.385 kb on - strand at 1583.402 kb on + strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.410 kb on - strand at 1583.545 kb on + strand at 1583.575 kb on - strand at 1583.613 kb on + strand, within typA at 1583.621 kb on - strand, within typA at 1583.688 kb on - strand, within typA at 1583.810 kb on - strand, within typA at 1583.892 kb on + strand, within typA at 1583.959 kb on + strand, within typA at 1584.009 kb on + strand, within typA at 1584.076 kb on + strand, within typA at 1584.099 kb on + strand, within typA at 1584.099 kb on + strand, within typA at 1584.126 kb on - strand, within typA at 1584.133 kb on + strand, within typA at 1584.150 kb on + strand, within typA at 1584.229 kb on + strand, within typA at 1584.265 kb on + strand, within typA at 1584.273 kb on - strand, within typA at 1584.316 kb on - strand, within typA at 1584.489 kb on + strand, within typA at 1584.489 kb on + strand, within typA at 1584.497 kb on - strand, within typA at 1584.499 kb on - strand, within typA at 1584.501 kb on - strand, within typA at 1584.543 kb on - strand, within typA at 1584.543 kb on - strand, within typA at 1584.543 kb on - strand, within typA at 1584.621 kb on - strand, within typA at 1584.705 kb on - strand, within typA at 1584.880 kb on - strand, within typA at 1584.902 kb on + strand, within typA at 1584.955 kb on + strand, within typA at 1585.061 kb on + strand at 1585.071 kb on - strand at 1585.101 kb on - strand at 1585.102 kb on - strand at 1585.118 kb on - strand at 1585.134 kb on + strand at 1585.188 kb on + strand at 1585.194 kb on + strand at 1585.194 kb on + strand at 1585.194 kb on + strand at 1585.195 kb on + strand at 1585.216 kb on + strand at 1585.216 kb on + strand at 1585.332 kb on - strand at 1585.368 kb on + strand, within Synpcc7942_1526 at 1585.387 kb on - strand, within Synpcc7942_1526 at 1585.392 kb on + strand, within Synpcc7942_1526 at 1585.404 kb on + strand, within Synpcc7942_1526 at 1585.427 kb on + strand, within Synpcc7942_1526 at 1585.515 kb on + strand, within Synpcc7942_1526 at 1585.536 kb on + strand, within Synpcc7942_1526 at 1585.536 kb on + strand, within Synpcc7942_1526 at 1585.537 kb on - strand, within Synpcc7942_1526 at 1585.557 kb on - strand, within Synpcc7942_1526 at 1585.564 kb on + strand, within Synpcc7942_1526 at 1585.564 kb on + strand, within Synpcc7942_1526 at 1585.564 kb on + strand, within Synpcc7942_1526 at 1585.572 kb on - strand, within Synpcc7942_1526 at 1585.586 kb on + strand, within Synpcc7942_1526 at 1585.589 kb on + strand, within Synpcc7942_1526 at 1585.596 kb on - strand, within Synpcc7942_1526 at 1585.598 kb on + strand, within Synpcc7942_1526 at 1585.607 kb on + strand, within Synpcc7942_1526 at 1585.671 kb on - strand, within Synpcc7942_1526 at 1585.671 kb on - strand, within Synpcc7942_1526 at 1585.682 kb on + strand at 1585.686 kb on + strand, within Synpcc7942_1526 at 1585.690 kb on - strand, within Synpcc7942_1526 at 1585.691 kb on + strand, within Synpcc7942_1526 at 1585.697 kb on + strand, within Synpcc7942_1526 at 1585.699 kb on - strand, within Synpcc7942_1526 at 1585.719 kb on + strand, within Synpcc7942_1526 at 1585.757 kb on - strand, within Synpcc7942_1526 at 1585.810 kb on + strand, within Synpcc7942_1526 at 1585.818 kb on - strand, within Synpcc7942_1526 at 1585.835 kb on - strand, within Synpcc7942_1526 at 1585.862 kb on - strand, within Synpcc7942_1526 at 1585.889 kb on - strand, within Synpcc7942_1526 at 1585.949 kb on + strand, within Synpcc7942_1526 at 1585.975 kb on - strand, within Synpcc7942_1526 at 1585.977 kb on + strand, within Synpcc7942_1526 at 1586.004 kb on + strand at 1586.004 kb on + strand at 1586.005 kb on + strand at 1586.013 kb on - strand at 1586.045 kb on - strand at 1586.072 kb on + strand at 1586.072 kb on + strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.080 kb on - strand at 1586.096 kb on + strand at 1586.096 kb on + strand at 1586.096 kb on + strand at 1586.096 kb on + strand at 1586.096 kb on + strand at 1586.096 kb on + strand at 1586.104 kb on - strand at 1586.104 kb on - strand at 1586.104 kb on - strand at 1586.111 kb on - strand at 1586.118 kb on - strand at 1586.122 kb on + strand at 1586.128 kb on - strand at 1586.153 kb on + strand at 1586.166 kb on + strand at 1586.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,582,922 - +8.5 1,582,986 + +0.7 1,583,053 - +1.5 1,583,090 - +0.5 1,583,119 - -0.8 1,583,199 + +0.7 1,583,200 + -0.1 1,583,211 + -3.0 1,583,211 + +0.5 1,583,211 + +0.3 1,583,212 + -0.4 1,583,218 + -0.9 1,583,219 - +1.2 1,583,219 - +1.8 1,583,219 - +1.5 1,583,219 - +2.4 1,583,219 - +0.9 1,583,220 - -0.5 1,583,226 - -1.1 1,583,228 + -0.2 1,583,279 + +0.9 1,583,279 + +1.7 1,583,279 + -0.3 1,583,279 + -1.3 1,583,279 + -1.5 1,583,279 + -0.9 1,583,279 + +0.1 1,583,279 + -2.7 1,583,279 + +2.9 1,583,279 + -0.8 1,583,279 + -0.7 1,583,279 + +1.2 1,583,279 + -0.7 1,583,287 - +1.1 1,583,287 - -0.5 1,583,287 - +0.9 1,583,287 - -2.2 1,583,287 - +0.6 1,583,287 - +0.7 1,583,287 - +1.9 1,583,287 - -0.5 1,583,287 - -1.5 1,583,287 - -0.3 1,583,287 - -3.2 1,583,287 - +1.9 1,583,287 - +0.7 1,583,287 - -0.7 1,583,291 + +2.7 1,583,299 - -1.3 1,583,370 - -2.0 1,583,370 - -2.2 1,583,385 - -3.0 1,583,385 - -2.0 1,583,402 + +0.1 1,583,410 - -0.6 1,583,410 - -1.9 1,583,410 - +0.1 1,583,410 - +1.1 1,583,410 - +0.6 1,583,410 - -1.3 1,583,410 - -2.3 1,583,410 - -1.4 1,583,410 - -3.0 1,583,545 + -2.5 1,583,575 - -2.6 1,583,613 + typA Synpcc7942_1525 0.11 -1.0 1,583,621 - typA Synpcc7942_1525 0.12 -2.1 1,583,688 - typA Synpcc7942_1525 0.16 -1.4 1,583,810 - typA Synpcc7942_1525 0.22 -1.0 1,583,892 + typA Synpcc7942_1525 0.27 -1.1 1,583,959 + typA Synpcc7942_1525 0.31 -1.3 1,584,009 + typA Synpcc7942_1525 0.34 -1.7 1,584,076 + typA Synpcc7942_1525 0.37 -1.8 1,584,099 + typA Synpcc7942_1525 0.39 -0.9 1,584,099 + typA Synpcc7942_1525 0.39 -1.1 1,584,126 - typA Synpcc7942_1525 0.40 -1.2 1,584,133 + typA Synpcc7942_1525 0.40 -2.5 1,584,150 + typA Synpcc7942_1525 0.41 -0.3 1,584,229 + typA Synpcc7942_1525 0.46 -1.6 1,584,265 + typA Synpcc7942_1525 0.48 -1.5 1,584,273 - typA Synpcc7942_1525 0.48 -2.3 1,584,316 - typA Synpcc7942_1525 0.51 -2.4 1,584,489 + typA Synpcc7942_1525 0.60 -1.1 1,584,489 + typA Synpcc7942_1525 0.60 +0.8 1,584,497 - typA Synpcc7942_1525 0.61 -2.5 1,584,499 - typA Synpcc7942_1525 0.61 -1.7 1,584,501 - typA Synpcc7942_1525 0.61 -1.4 1,584,543 - typA Synpcc7942_1525 0.63 +0.0 1,584,543 - typA Synpcc7942_1525 0.63 -1.3 1,584,543 - typA Synpcc7942_1525 0.63 -3.2 1,584,621 - typA Synpcc7942_1525 0.68 -0.5 1,584,705 - typA Synpcc7942_1525 0.72 -1.1 1,584,880 - typA Synpcc7942_1525 0.82 +0.1 1,584,902 + typA Synpcc7942_1525 0.83 -2.6 1,584,955 + typA Synpcc7942_1525 0.86 -1.5 1,585,061 + +0.1 1,585,071 - -1.1 1,585,101 - -0.5 1,585,102 - -0.7 1,585,118 - -2.5 1,585,134 + -0.1 1,585,188 + +1.1 1,585,194 + -1.4 1,585,194 + -1.8 1,585,194 + +0.8 1,585,195 + +0.5 1,585,216 + +1.1 1,585,216 + -0.2 1,585,332 - +1.3 1,585,368 + Synpcc7942_1526 0.10 +2.4 1,585,387 - Synpcc7942_1526 0.13 -1.4 1,585,392 + Synpcc7942_1526 0.13 -0.5 1,585,404 + Synpcc7942_1526 0.15 +1.7 1,585,427 + Synpcc7942_1526 0.18 -2.4 1,585,515 + Synpcc7942_1526 0.29 +1.3 1,585,536 + Synpcc7942_1526 0.31 -0.1 1,585,536 + Synpcc7942_1526 0.31 -0.7 1,585,537 - Synpcc7942_1526 0.32 -0.1 1,585,557 - Synpcc7942_1526 0.34 +0.1 1,585,564 + Synpcc7942_1526 0.35 +0.1 1,585,564 + Synpcc7942_1526 0.35 -0.5 1,585,564 + Synpcc7942_1526 0.35 -1.0 1,585,572 - Synpcc7942_1526 0.36 +2.2 1,585,586 + Synpcc7942_1526 0.38 +0.5 1,585,589 + Synpcc7942_1526 0.38 +1.3 1,585,596 - Synpcc7942_1526 0.39 -0.6 1,585,598 + Synpcc7942_1526 0.39 -0.5 1,585,607 + Synpcc7942_1526 0.40 +0.1 1,585,671 - Synpcc7942_1526 0.48 -1.8 1,585,671 - Synpcc7942_1526 0.48 -2.6 1,585,682 + +0.9 1,585,686 + Synpcc7942_1526 0.50 -1.2 1,585,690 - Synpcc7942_1526 0.51 -0.5 1,585,691 + Synpcc7942_1526 0.51 -1.8 1,585,697 + Synpcc7942_1526 0.52 -2.1 1,585,699 - Synpcc7942_1526 0.52 +0.5 1,585,719 + Synpcc7942_1526 0.55 +3.4 1,585,757 - Synpcc7942_1526 0.59 -0.5 1,585,810 + Synpcc7942_1526 0.66 -1.3 1,585,818 - Synpcc7942_1526 0.67 +0.3 1,585,835 - Synpcc7942_1526 0.69 -0.7 1,585,862 - Synpcc7942_1526 0.73 +1.2 1,585,889 - Synpcc7942_1526 0.76 -1.3 1,585,949 + Synpcc7942_1526 0.84 -1.4 1,585,975 - Synpcc7942_1526 0.87 -3.0 1,585,977 + Synpcc7942_1526 0.87 -1.0 1,586,004 + -1.4 1,586,004 + +1.0 1,586,005 + +0.6 1,586,013 - +0.5 1,586,045 - -2.1 1,586,072 + -2.9 1,586,072 + -2.0 1,586,080 - -1.2 1,586,080 - -0.6 1,586,080 - +0.9 1,586,080 - -1.1 1,586,080 - -1.1 1,586,080 - -2.2 1,586,080 - -0.5 1,586,080 - -1.0 1,586,080 - -1.5 1,586,080 - -0.0 1,586,096 + +0.7 1,586,096 + -0.3 1,586,096 + -1.1 1,586,096 + -0.8 1,586,096 + -3.5 1,586,096 + -0.1 1,586,104 - -2.0 1,586,104 - +2.3 1,586,104 - +1.2 1,586,111 - -2.7 1,586,118 - +1.9 1,586,122 + +1.9 1,586,128 - +0.6 1,586,153 + -3.3 1,586,166 + -1.0 1,586,193 - -0.5
Or see this region's nucleotide sequence