Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metH and Synpcc7942_1373 are separated by 154 nucleotides Synpcc7942_1373 and rluA are separated by 300 nucleotides
Synpcc7942_1372: metH - methionine synthase (B12-dependent), at 1,409,560 to 1,413,132
metH
Synpcc7942_1373: Synpcc7942_1373 - hydrogenase accessory protein, at 1,413,287 to 1,413,982
_1373
Synpcc7942_1374: rluA - ribosomal large subunit pseudouridine synthase D, at 1,414,283 to 1,415,914
rluA
Position (kb) 1413
1414 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1413.292 kb on - strand at 1413.327 kb on - strand at 1413.474 kb on - strand, within Synpcc7942_1373 at 1413.984 kb on + strand at 1414.005 kb on + strand at 1414.014 kb on + strand at 1414.022 kb on - strand at 1414.134 kb on + strand at 1414.411 kb on + strand at 1414.411 kb on + strand at 1414.420 kb on - strand at 1414.462 kb on + strand, within rluA at 1414.468 kb on - strand, within rluA at 1414.472 kb on + strand, within rluA at 1414.472 kb on + strand, within rluA at 1414.480 kb on - strand, within rluA at 1414.518 kb on + strand, within rluA at 1414.526 kb on - strand, within rluA at 1414.528 kb on + strand, within rluA at 1414.528 kb on + strand, within rluA at 1414.531 kb on - strand, within rluA at 1414.591 kb on + strand, within rluA at 1414.606 kb on + strand, within rluA at 1414.614 kb on - strand, within rluA at 1414.629 kb on + strand, within rluA at 1414.629 kb on + strand, within rluA at 1414.629 kb on + strand, within rluA at 1414.631 kb on + strand, within rluA at 1414.631 kb on - strand, within rluA at 1414.637 kb on - strand, within rluA at 1414.637 kb on - strand, within rluA at 1414.639 kb on + strand, within rluA at 1414.642 kb on - strand, within rluA at 1414.714 kb on + strand, within rluA at 1414.727 kb on + strand, within rluA at 1414.761 kb on - strand, within rluA at 1414.763 kb on + strand, within rluA at 1414.767 kb on + strand, within rluA at 1414.776 kb on + strand, within rluA at 1414.784 kb on - strand, within rluA at 1414.804 kb on - strand, within rluA at 1414.811 kb on + strand, within rluA at 1414.816 kb on + strand, within rluA at 1414.819 kb on - strand at 1414.833 kb on - strand, within rluA at 1414.877 kb on - strand, within rluA at 1414.915 kb on + strand, within rluA at 1414.915 kb on + strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.923 kb on - strand, within rluA at 1414.937 kb on + strand, within rluA at 1414.946 kb on - strand, within rluA at 1414.974 kb on + strand, within rluA
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,413,292 - +2.1 1,413,327 - -3.5 1,413,474 - Synpcc7942_1373 0.27 -2.4 1,413,984 + -1.3 1,414,005 + -3.0 1,414,014 + -4.1 1,414,022 - -5.0 1,414,134 + -0.9 1,414,411 + -1.5 1,414,411 + -1.5 1,414,420 - -1.3 1,414,462 + rluA Synpcc7942_1374 0.11 -1.5 1,414,468 - rluA Synpcc7942_1374 0.11 +0.1 1,414,472 + rluA Synpcc7942_1374 0.12 -2.0 1,414,472 + rluA Synpcc7942_1374 0.12 -1.0 1,414,480 - rluA Synpcc7942_1374 0.12 -0.8 1,414,518 + rluA Synpcc7942_1374 0.14 -1.5 1,414,526 - rluA Synpcc7942_1374 0.15 -2.8 1,414,528 + rluA Synpcc7942_1374 0.15 -0.5 1,414,528 + rluA Synpcc7942_1374 0.15 -2.4 1,414,531 - rluA Synpcc7942_1374 0.15 -2.6 1,414,591 + rluA Synpcc7942_1374 0.19 -1.8 1,414,606 + rluA Synpcc7942_1374 0.20 +1.0 1,414,614 - rluA Synpcc7942_1374 0.20 -1.7 1,414,629 + rluA Synpcc7942_1374 0.21 -1.9 1,414,629 + rluA Synpcc7942_1374 0.21 -3.4 1,414,629 + rluA Synpcc7942_1374 0.21 -1.5 1,414,631 + rluA Synpcc7942_1374 0.21 +0.3 1,414,631 - rluA Synpcc7942_1374 0.21 -1.8 1,414,637 - rluA Synpcc7942_1374 0.22 -0.8 1,414,637 - rluA Synpcc7942_1374 0.22 -1.1 1,414,639 + rluA Synpcc7942_1374 0.22 -2.8 1,414,642 - rluA Synpcc7942_1374 0.22 -2.9 1,414,714 + rluA Synpcc7942_1374 0.26 -2.8 1,414,727 + rluA Synpcc7942_1374 0.27 -1.0 1,414,761 - rluA Synpcc7942_1374 0.29 -1.6 1,414,763 + rluA Synpcc7942_1374 0.29 -2.0 1,414,767 + rluA Synpcc7942_1374 0.30 +1.3 1,414,776 + rluA Synpcc7942_1374 0.30 -1.4 1,414,784 - rluA Synpcc7942_1374 0.31 -2.4 1,414,804 - rluA Synpcc7942_1374 0.32 +0.2 1,414,811 + rluA Synpcc7942_1374 0.32 -0.4 1,414,816 + rluA Synpcc7942_1374 0.33 -2.0 1,414,819 - +0.1 1,414,833 - rluA Synpcc7942_1374 0.34 -1.3 1,414,877 - rluA Synpcc7942_1374 0.36 -1.0 1,414,915 + rluA Synpcc7942_1374 0.39 -1.5 1,414,915 + rluA Synpcc7942_1374 0.39 -0.9 1,414,923 - rluA Synpcc7942_1374 0.39 -3.4 1,414,923 - rluA Synpcc7942_1374 0.39 +0.4 1,414,923 - rluA Synpcc7942_1374 0.39 -0.6 1,414,923 - rluA Synpcc7942_1374 0.39 -1.1 1,414,937 + rluA Synpcc7942_1374 0.40 -0.7 1,414,946 - rluA Synpcc7942_1374 0.41 -0.9 1,414,974 + rluA Synpcc7942_1374 0.42 -1.0
Or see this region's nucleotide sequence