Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1339

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1338 and Synpcc7942_1339 are separated by 133 nucleotidesSynpcc7942_1339 and def are separated by 87 nucleotidesdef and Synpcc7942_1341 are separated by 116 nucleotides Synpcc7942_1338: Synpcc7942_1338 - hypothetical protein, at 1,372,863 to 1,373,645 _1338 Synpcc7942_1339: Synpcc7942_1339 - hypothetical protein, at 1,373,779 to 1,373,973 _1339 Synpcc7942_1340: def - peptide deformylase, at 1,374,061 to 1,374,639 def Synpcc7942_1341: Synpcc7942_1341 - hypothetical protein, at 1,374,756 to 1,375,841 _1341 Position (kb) 1373 1374Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1372.780 kb on + strandat 1372.806 kb on - strandat 1372.807 kb on - strandat 1372.809 kb on + strandat 1372.817 kb on - strandat 1372.837 kb on + strandat 1372.871 kb on + strandat 1372.886 kb on + strandat 1372.894 kb on - strandat 1372.928 kb on - strandat 1372.947 kb on + strand, within Synpcc7942_1338at 1372.948 kb on - strand, within Synpcc7942_1338at 1372.952 kb on + strand, within Synpcc7942_1338at 1372.955 kb on - strand, within Synpcc7942_1338at 1372.957 kb on + strand, within Synpcc7942_1338at 1372.965 kb on - strand, within Synpcc7942_1338at 1373.014 kb on + strand, within Synpcc7942_1338at 1373.014 kb on + strand, within Synpcc7942_1338at 1373.014 kb on + strand, within Synpcc7942_1338at 1373.062 kb on + strand, within Synpcc7942_1338at 1373.067 kb on + strand, within Synpcc7942_1338at 1373.075 kb on - strand, within Synpcc7942_1338at 1373.107 kb on - strand, within Synpcc7942_1338at 1373.135 kb on - strand, within Synpcc7942_1338at 1373.581 kb on - strandat 1373.736 kb on - strandat 1373.756 kb on + strandat 1373.777 kb on + strandat 1373.777 kb on + strandat 1373.777 kb on + strandat 1373.777 kb on + strandat 1373.777 kb on + strandat 1373.782 kb on + strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.785 kb on - strandat 1373.790 kb on - strandat 1373.828 kb on + strand, within Synpcc7942_1339at 1373.828 kb on + strand, within Synpcc7942_1339at 1373.867 kb on - strand, within Synpcc7942_1339at 1373.869 kb on + strand, within Synpcc7942_1339at 1373.871 kb on + strand, within Synpcc7942_1339at 1373.871 kb on + strand, within Synpcc7942_1339at 1373.876 kb on + strand, within Synpcc7942_1339at 1373.879 kb on - strand, within Synpcc7942_1339at 1373.882 kb on + strand, within Synpcc7942_1339at 1373.901 kb on - strand, within Synpcc7942_1339at 1373.922 kb on + strand, within Synpcc7942_1339at 1373.935 kb on - strand, within Synpcc7942_1339at 1373.935 kb on - strand, within Synpcc7942_1339at 1373.937 kb on + strand, within Synpcc7942_1339at 1373.963 kb on + strandat 1374.023 kb on - strandat 1374.029 kb on - strandat 1374.029 kb on - strandat 1374.035 kb on + strandat 1374.035 kb on + strandat 1374.037 kb on - strandat 1374.088 kb on - strandat 1374.635 kb on + strandat 1374.635 kb on + strandat 1374.665 kb on + strandat 1374.767 kb on + strandat 1374.786 kb on - strandat 1374.846 kb on + strandat 1374.848 kb on + strandat 1374.854 kb on - strandat 1374.871 kb on - strand, within Synpcc7942_1341at 1374.877 kb on - strand, within Synpcc7942_1341at 1374.891 kb on + strand, within Synpcc7942_1341at 1374.899 kb on - strand, within Synpcc7942_1341at 1374.899 kb on - strandat 1374.899 kb on - strand, within Synpcc7942_1341at 1374.923 kb on + strand, within Synpcc7942_1341at 1374.928 kb on + strand, within Synpcc7942_1341at 1374.931 kb on - strand, within Synpcc7942_1341at 1374.960 kb on + strand, within Synpcc7942_1341at 1374.963 kb on + strand, within Synpcc7942_1341at 1374.965 kb on + strand, within Synpcc7942_1341at 1374.972 kb on + strand, within Synpcc7942_1341at 1374.972 kb on + strand, within Synpcc7942_1341at 1374.972 kb on + strand, within Synpcc7942_1341at 1374.972 kb on + strand, within Synpcc7942_1341

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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1,372,780 + -1.9
1,372,806 - -1.6
1,372,807 - -2.2
1,372,809 + -0.9
1,372,817 - -1.2
1,372,837 + -4.8
1,372,871 + -2.3
1,372,886 + -0.8
1,372,894 - -1.1
1,372,928 - -0.8
1,372,947 + Synpcc7942_1338 0.11 -3.3
1,372,948 - Synpcc7942_1338 0.11 -1.6
1,372,952 + Synpcc7942_1338 0.11 -1.8
1,372,955 - Synpcc7942_1338 0.12 -1.5
1,372,957 + Synpcc7942_1338 0.12 -3.9
1,372,965 - Synpcc7942_1338 0.13 -2.5
1,373,014 + Synpcc7942_1338 0.19 -2.3
1,373,014 + Synpcc7942_1338 0.19 -0.9
1,373,014 + Synpcc7942_1338 0.19 -1.8
1,373,062 + Synpcc7942_1338 0.25 -0.9
1,373,067 + Synpcc7942_1338 0.26 -4.0
1,373,075 - Synpcc7942_1338 0.27 -0.4
1,373,107 - Synpcc7942_1338 0.31 -0.4
1,373,135 - Synpcc7942_1338 0.35 -1.1
1,373,581 - +0.4
1,373,736 - -1.2
1,373,756 + -2.9
1,373,777 + -0.4
1,373,777 + -2.6
1,373,777 + -2.2
1,373,777 + -2.4
1,373,777 + -3.7
1,373,782 + -3.1
1,373,785 - -2.1
1,373,785 - +0.4
1,373,785 - -1.2
1,373,785 - +1.2
1,373,785 - -2.5
1,373,785 - -3.0
1,373,785 - -0.6
1,373,785 - -2.6
1,373,785 - -1.3
1,373,790 - -1.6
1,373,828 + Synpcc7942_1339 0.25 -0.9
1,373,828 + Synpcc7942_1339 0.25 -2.6
1,373,867 - Synpcc7942_1339 0.45 -0.4
1,373,869 + Synpcc7942_1339 0.46 -2.7
1,373,871 + Synpcc7942_1339 0.47 -0.5
1,373,871 + Synpcc7942_1339 0.47 -1.9
1,373,876 + Synpcc7942_1339 0.50 -1.4
1,373,879 - Synpcc7942_1339 0.51 -1.3
1,373,882 + Synpcc7942_1339 0.53 -0.3
1,373,901 - Synpcc7942_1339 0.63 -0.6
1,373,922 + Synpcc7942_1339 0.73 -2.2
1,373,935 - Synpcc7942_1339 0.80 -3.2
1,373,935 - Synpcc7942_1339 0.80 -1.9
1,373,937 + Synpcc7942_1339 0.81 -3.7
1,373,963 + -3.1
1,374,023 - -1.7
1,374,029 - -1.1
1,374,029 - -4.0
1,374,035 + +2.2
1,374,035 + +0.8
1,374,037 - -1.1
1,374,088 - +0.5
1,374,635 + -0.0
1,374,635 + +0.1
1,374,665 + +2.1
1,374,767 + -2.3
1,374,786 - +0.4
1,374,846 + +0.2
1,374,848 + -1.4
1,374,854 - -0.5
1,374,871 - Synpcc7942_1341 0.11 +2.6
1,374,877 - Synpcc7942_1341 0.11 +1.2
1,374,891 + Synpcc7942_1341 0.12 +0.6
1,374,899 - Synpcc7942_1341 0.13 -1.1
1,374,899 - +0.4
1,374,899 - Synpcc7942_1341 0.13 +3.7
1,374,923 + Synpcc7942_1341 0.15 -4.0
1,374,928 + Synpcc7942_1341 0.16 -1.1
1,374,931 - Synpcc7942_1341 0.16 +2.4
1,374,960 + Synpcc7942_1341 0.19 +1.8
1,374,963 + Synpcc7942_1341 0.19 -3.2
1,374,965 + Synpcc7942_1341 0.19 -0.4
1,374,972 + Synpcc7942_1341 0.20 +0.2
1,374,972 + Synpcc7942_1341 0.20 +0.7
1,374,972 + Synpcc7942_1341 0.20 +0.1
1,374,972 + Synpcc7942_1341 0.20 -0.7

Or see this region's nucleotide sequence