Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1337 and Synpcc7942_1338 are separated by 147 nucleotides Synpcc7942_1338 and Synpcc7942_1339 are separated by 133 nucleotides Synpcc7942_1339 and def are separated by 87 nucleotides
Synpcc7942_1337: Synpcc7942_1337 - Integrins alpha chain, at 1,368,411 to 1,372,715
_1337
Synpcc7942_1338: Synpcc7942_1338 - hypothetical protein, at 1,372,863 to 1,373,645
_1338
Synpcc7942_1339: Synpcc7942_1339 - hypothetical protein, at 1,373,779 to 1,373,973
_1339
Synpcc7942_1340: def - peptide deformylase, at 1,374,061 to 1,374,639
def
Position (kb) 1372
1373
1374 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 1371.871 kb on + strand, within Synpcc7942_1337 at 1371.884 kb on - strand, within Synpcc7942_1337 at 1371.894 kb on + strand, within Synpcc7942_1337 at 1371.894 kb on + strand, within Synpcc7942_1337 at 1371.902 kb on - strand, within Synpcc7942_1337 at 1371.918 kb on + strand, within Synpcc7942_1337 at 1371.918 kb on + strand, within Synpcc7942_1337 at 1371.925 kb on + strand, within Synpcc7942_1337 at 1371.926 kb on - strand, within Synpcc7942_1337 at 1371.933 kb on - strand, within Synpcc7942_1337 at 1371.937 kb on + strand, within Synpcc7942_1337 at 1371.955 kb on - strand, within Synpcc7942_1337 at 1371.962 kb on - strand, within Synpcc7942_1337 at 1371.983 kb on - strand, within Synpcc7942_1337 at 1371.983 kb on - strand, within Synpcc7942_1337 at 1372.003 kb on - strand, within Synpcc7942_1337 at 1372.061 kb on - strand, within Synpcc7942_1337 at 1372.074 kb on - strand, within Synpcc7942_1337 at 1372.083 kb on + strand, within Synpcc7942_1337 at 1372.089 kb on + strand, within Synpcc7942_1337 at 1372.094 kb on + strand, within Synpcc7942_1337 at 1372.119 kb on + strand, within Synpcc7942_1337 at 1372.135 kb on + strand, within Synpcc7942_1337 at 1372.147 kb on + strand, within Synpcc7942_1337 at 1372.147 kb on + strand, within Synpcc7942_1337 at 1372.148 kb on + strand, within Synpcc7942_1337 at 1372.148 kb on + strand, within Synpcc7942_1337 at 1372.155 kb on - strand, within Synpcc7942_1337 at 1372.202 kb on - strand, within Synpcc7942_1337 at 1372.218 kb on + strand, within Synpcc7942_1337 at 1372.235 kb on + strand, within Synpcc7942_1337 at 1372.243 kb on - strand, within Synpcc7942_1337 at 1372.248 kb on - strand, within Synpcc7942_1337 at 1372.345 kb on - strand at 1372.364 kb on - strand at 1372.369 kb on - strand at 1372.371 kb on + strand at 1372.379 kb on - strand at 1372.481 kb on + strand at 1372.518 kb on + strand at 1372.518 kb on + strand at 1372.572 kb on + strand at 1372.579 kb on - strand at 1372.598 kb on - strand at 1372.608 kb on - strand at 1372.613 kb on - strand at 1372.633 kb on - strand at 1372.672 kb on - strand at 1372.681 kb on - strand at 1372.703 kb on - strand at 1372.709 kb on + strand at 1372.741 kb on + strand at 1372.780 kb on + strand at 1372.806 kb on - strand at 1372.807 kb on - strand at 1372.809 kb on + strand at 1372.817 kb on - strand at 1372.837 kb on + strand at 1372.871 kb on + strand at 1372.886 kb on + strand at 1372.894 kb on - strand at 1372.928 kb on - strand at 1372.947 kb on + strand, within Synpcc7942_1338 at 1372.948 kb on - strand, within Synpcc7942_1338 at 1372.952 kb on + strand, within Synpcc7942_1338 at 1372.955 kb on - strand, within Synpcc7942_1338 at 1372.957 kb on + strand, within Synpcc7942_1338 at 1372.965 kb on - strand, within Synpcc7942_1338 at 1373.014 kb on + strand, within Synpcc7942_1338 at 1373.014 kb on + strand, within Synpcc7942_1338 at 1373.014 kb on + strand, within Synpcc7942_1338 at 1373.062 kb on + strand, within Synpcc7942_1338 at 1373.067 kb on + strand, within Synpcc7942_1338 at 1373.075 kb on - strand, within Synpcc7942_1338 at 1373.107 kb on - strand, within Synpcc7942_1338 at 1373.135 kb on - strand, within Synpcc7942_1338 at 1373.581 kb on - strand at 1373.736 kb on - strand at 1373.756 kb on + strand at 1373.777 kb on + strand at 1373.777 kb on + strand at 1373.777 kb on + strand at 1373.777 kb on + strand at 1373.777 kb on + strand at 1373.782 kb on + strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.785 kb on - strand at 1373.790 kb on - strand at 1373.828 kb on + strand, within Synpcc7942_1339 at 1373.828 kb on + strand, within Synpcc7942_1339 at 1373.867 kb on - strand, within Synpcc7942_1339 at 1373.869 kb on + strand, within Synpcc7942_1339 at 1373.871 kb on + strand, within Synpcc7942_1339 at 1373.871 kb on + strand, within Synpcc7942_1339 at 1373.876 kb on + strand, within Synpcc7942_1339 at 1373.879 kb on - strand, within Synpcc7942_1339 at 1373.882 kb on + strand, within Synpcc7942_1339 at 1373.901 kb on - strand, within Synpcc7942_1339 at 1373.922 kb on + strand, within Synpcc7942_1339 at 1373.935 kb on - strand, within Synpcc7942_1339 at 1373.935 kb on - strand, within Synpcc7942_1339 at 1373.937 kb on + strand, within Synpcc7942_1339 at 1373.963 kb on + strand at 1374.023 kb on - strand at 1374.029 kb on - strand at 1374.029 kb on - strand at 1374.035 kb on + strand at 1374.035 kb on + strand at 1374.037 kb on - strand at 1374.088 kb on - strand at 1374.635 kb on + strand at 1374.635 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 1,371,871 + Synpcc7942_1337 0.80 -3.8 1,371,884 - Synpcc7942_1337 0.81 -3.1 1,371,894 + Synpcc7942_1337 0.81 -1.8 1,371,894 + Synpcc7942_1337 0.81 -1.2 1,371,902 - Synpcc7942_1337 0.81 -0.6 1,371,918 + Synpcc7942_1337 0.81 -1.9 1,371,918 + Synpcc7942_1337 0.81 -0.1 1,371,925 + Synpcc7942_1337 0.82 -1.1 1,371,926 - Synpcc7942_1337 0.82 -4.3 1,371,933 - Synpcc7942_1337 0.82 -2.7 1,371,937 + Synpcc7942_1337 0.82 +1.1 1,371,955 - Synpcc7942_1337 0.82 +1.8 1,371,962 - Synpcc7942_1337 0.82 +1.1 1,371,983 - Synpcc7942_1337 0.83 -0.1 1,371,983 - Synpcc7942_1337 0.83 -0.7 1,372,003 - Synpcc7942_1337 0.83 -0.9 1,372,061 - Synpcc7942_1337 0.85 -0.5 1,372,074 - Synpcc7942_1337 0.85 -0.3 1,372,083 + Synpcc7942_1337 0.85 +0.8 1,372,089 + Synpcc7942_1337 0.85 -0.3 1,372,094 + Synpcc7942_1337 0.86 -2.0 1,372,119 + Synpcc7942_1337 0.86 +2.5 1,372,135 + Synpcc7942_1337 0.87 -3.9 1,372,147 + Synpcc7942_1337 0.87 -2.9 1,372,147 + Synpcc7942_1337 0.87 -0.7 1,372,148 + Synpcc7942_1337 0.87 -1.2 1,372,148 + Synpcc7942_1337 0.87 +1.0 1,372,155 - Synpcc7942_1337 0.87 -2.6 1,372,202 - Synpcc7942_1337 0.88 +0.7 1,372,218 + Synpcc7942_1337 0.88 +4.4 1,372,235 + Synpcc7942_1337 0.89 +2.4 1,372,243 - Synpcc7942_1337 0.89 -1.3 1,372,248 - Synpcc7942_1337 0.89 -2.6 1,372,345 - -0.9 1,372,364 - -1.5 1,372,369 - +0.4 1,372,371 + -3.1 1,372,379 - -1.6 1,372,481 + -1.3 1,372,518 + -2.7 1,372,518 + +0.6 1,372,572 + +1.2 1,372,579 - +2.9 1,372,598 - +1.1 1,372,608 - -1.5 1,372,613 - +1.1 1,372,633 - +2.4 1,372,672 - -1.2 1,372,681 - -3.6 1,372,703 - -0.3 1,372,709 + -0.4 1,372,741 + -2.5 1,372,780 + -1.9 1,372,806 - -1.6 1,372,807 - -2.2 1,372,809 + -0.9 1,372,817 - -1.2 1,372,837 + -4.8 1,372,871 + -2.3 1,372,886 + -0.8 1,372,894 - -1.1 1,372,928 - -0.8 1,372,947 + Synpcc7942_1338 0.11 -3.3 1,372,948 - Synpcc7942_1338 0.11 -1.6 1,372,952 + Synpcc7942_1338 0.11 -1.8 1,372,955 - Synpcc7942_1338 0.12 -1.5 1,372,957 + Synpcc7942_1338 0.12 -3.9 1,372,965 - Synpcc7942_1338 0.13 -2.5 1,373,014 + Synpcc7942_1338 0.19 -2.3 1,373,014 + Synpcc7942_1338 0.19 -0.9 1,373,014 + Synpcc7942_1338 0.19 -1.8 1,373,062 + Synpcc7942_1338 0.25 -0.9 1,373,067 + Synpcc7942_1338 0.26 -4.0 1,373,075 - Synpcc7942_1338 0.27 -0.4 1,373,107 - Synpcc7942_1338 0.31 -0.4 1,373,135 - Synpcc7942_1338 0.35 -1.1 1,373,581 - +0.4 1,373,736 - -1.2 1,373,756 + -2.9 1,373,777 + -0.4 1,373,777 + -2.6 1,373,777 + -2.2 1,373,777 + -2.4 1,373,777 + -3.7 1,373,782 + -3.1 1,373,785 - -2.1 1,373,785 - +0.4 1,373,785 - -1.2 1,373,785 - +1.2 1,373,785 - -2.5 1,373,785 - -3.0 1,373,785 - -0.6 1,373,785 - -2.6 1,373,785 - -1.3 1,373,790 - -1.6 1,373,828 + Synpcc7942_1339 0.25 -0.9 1,373,828 + Synpcc7942_1339 0.25 -2.6 1,373,867 - Synpcc7942_1339 0.45 -0.4 1,373,869 + Synpcc7942_1339 0.46 -2.7 1,373,871 + Synpcc7942_1339 0.47 -0.5 1,373,871 + Synpcc7942_1339 0.47 -1.9 1,373,876 + Synpcc7942_1339 0.50 -1.4 1,373,879 - Synpcc7942_1339 0.51 -1.3 1,373,882 + Synpcc7942_1339 0.53 -0.3 1,373,901 - Synpcc7942_1339 0.63 -0.6 1,373,922 + Synpcc7942_1339 0.73 -2.2 1,373,935 - Synpcc7942_1339 0.80 -3.2 1,373,935 - Synpcc7942_1339 0.80 -1.9 1,373,937 + Synpcc7942_1339 0.81 -3.7 1,373,963 + -3.1 1,374,023 - -1.7 1,374,029 - -1.1 1,374,029 - -4.0 1,374,035 + +2.2 1,374,035 + +0.8 1,374,037 - -1.1 1,374,088 - +0.5 1,374,635 + -0.0 1,374,635 + +0.1
Or see this region's nucleotide sequence