Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0981 and Synpcc7942_0982 are separated by 58 nucleotides Synpcc7942_0982 and deoC are separated by 19 nucleotides deoC and recO overlap by 4 nucleotides
Synpcc7942_0981: Synpcc7942_0981 - hypothetical protein, at 989,800 to 991,494
_0981
Synpcc7942_0982: Synpcc7942_0982 - hypothetical protein, at 991,553 to 992,167
_0982
Synpcc7942_0983: deoC - deoxyribose-phosphate aldolase, at 992,187 to 992,873
deoC
Synpcc7942_0984: recO - DNA repair protein RecO, at 992,870 to 993,670
recO
Position (kb) 991
992
993 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 990.583 kb on - strand, within Synpcc7942_0981 at 990.630 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.684 kb on + strand, within Synpcc7942_0981 at 990.692 kb on + strand, within Synpcc7942_0981 at 990.697 kb on + strand, within Synpcc7942_0981 at 990.759 kb on - strand, within Synpcc7942_0981 at 990.766 kb on - strand, within Synpcc7942_0981 at 990.782 kb on + strand, within Synpcc7942_0981 at 990.819 kb on + strand, within Synpcc7942_0981 at 990.830 kb on - strand, within Synpcc7942_0981 at 990.856 kb on + strand, within Synpcc7942_0981 at 990.864 kb on - strand, within Synpcc7942_0981 at 990.874 kb on + strand at 990.899 kb on - strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.930 kb on + strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.978 kb on - strand, within Synpcc7942_0981 at 991.001 kb on - strand, within Synpcc7942_0981 at 991.022 kb on - strand, within Synpcc7942_0981 at 991.027 kb on + strand, within Synpcc7942_0981 at 991.037 kb on + strand, within Synpcc7942_0981 at 991.105 kb on - strand, within Synpcc7942_0981 at 991.181 kb on - strand, within Synpcc7942_0981 at 991.212 kb on - strand, within Synpcc7942_0981 at 991.236 kb on + strand, within Synpcc7942_0981 at 991.244 kb on - strand, within Synpcc7942_0981 at 991.249 kb on + strand, within Synpcc7942_0981 at 991.318 kb on + strand, within Synpcc7942_0981 at 991.341 kb on - strand at 991.348 kb on - strand at 991.348 kb on - strand at 991.350 kb on - strand at 991.350 kb on - strand at 991.420 kb on - strand at 991.432 kb on + strand at 991.432 kb on + strand at 991.440 kb on - strand at 991.465 kb on - strand at 991.478 kb on + strand at 991.478 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.507 kb on - strand at 991.509 kb on + strand at 991.526 kb on + strand at 991.534 kb on - strand at 991.536 kb on - strand at 991.544 kb on - strand at 991.548 kb on + strand at 991.548 kb on + strand at 991.554 kb on - strand at 991.555 kb on + strand at 991.556 kb on - strand at 991.556 kb on - strand at 991.567 kb on + strand at 991.580 kb on + strand at 991.584 kb on + strand at 991.657 kb on + strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.684 kb on - strand, within Synpcc7942_0982 at 991.693 kb on + strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.778 kb on + strand, within Synpcc7942_0982 at 991.786 kb on - strand, within Synpcc7942_0982 at 991.806 kb on - strand, within Synpcc7942_0982 at 991.904 kb on - strand, within Synpcc7942_0982 at 991.927 kb on - strand, within Synpcc7942_0982 at 991.931 kb on + strand, within Synpcc7942_0982 at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.191 kb on - strand at 992.213 kb on - strand at 992.219 kb on + strand at 992.257 kb on + strand, within deoC at 992.265 kb on - strand, within deoC at 992.320 kb on - strand, within deoC at 992.325 kb on - strand, within deoC at 992.343 kb on - strand, within deoC at 992.353 kb on + strand, within deoC at 992.368 kb on + strand, within deoC at 992.370 kb on + strand, within deoC at 992.376 kb on - strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.468 kb on + strand, within deoC at 992.492 kb on - strand, within deoC at 992.492 kb on - strand, within deoC at 992.514 kb on + strand, within deoC at 992.517 kb on - strand, within deoC at 992.518 kb on - strand, within deoC at 992.523 kb on + strand, within deoC at 992.557 kb on - strand, within deoC at 992.557 kb on - strand, within deoC at 992.562 kb on + strand, within deoC at 992.613 kb on - strand, within deoC at 992.624 kb on + strand, within deoC at 992.629 kb on + strand, within deoC at 992.631 kb on - strand, within deoC at 992.637 kb on - strand, within deoC at 992.657 kb on + strand, within deoC at 992.660 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.685 kb on + strand, within deoC at 992.693 kb on - strand, within deoC at 992.718 kb on + strand, within deoC at 992.765 kb on + strand, within deoC at 992.786 kb on - strand, within deoC at 992.796 kb on + strand, within deoC at 992.809 kb on + strand at 992.829 kb on - strand at 992.840 kb on + strand at 992.842 kb on - strand at 992.849 kb on - strand at 992.859 kb on - strand at 992.859 kb on - strand at 992.867 kb on + strand at 992.875 kb on - strand at 992.878 kb on + strand at 992.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 990,583 - Synpcc7942_0981 0.46 -2.5 990,630 + Synpcc7942_0981 0.49 +0.3 990,632 + Synpcc7942_0981 0.49 -1.7 990,632 + Synpcc7942_0981 0.49 -1.4 990,684 + Synpcc7942_0981 0.52 -1.5 990,692 + Synpcc7942_0981 0.53 -1.3 990,697 + Synpcc7942_0981 0.53 -1.5 990,759 - Synpcc7942_0981 0.57 +1.7 990,766 - Synpcc7942_0981 0.57 -0.1 990,782 + Synpcc7942_0981 0.58 -1.0 990,819 + Synpcc7942_0981 0.60 -1.2 990,830 - Synpcc7942_0981 0.61 -0.2 990,856 + Synpcc7942_0981 0.62 -1.4 990,864 - Synpcc7942_0981 0.63 -4.4 990,874 + -1.0 990,899 - Synpcc7942_0981 0.65 -2.8 990,914 + Synpcc7942_0981 0.66 +1.0 990,914 + Synpcc7942_0981 0.66 -0.7 990,914 + Synpcc7942_0981 0.66 +1.0 990,922 - Synpcc7942_0981 0.66 +0.4 990,922 - Synpcc7942_0981 0.66 -0.9 990,922 - Synpcc7942_0981 0.66 +0.8 990,922 - Synpcc7942_0981 0.66 -2.2 990,922 - Synpcc7942_0981 0.66 -2.2 990,922 - Synpcc7942_0981 0.66 -3.2 990,930 + Synpcc7942_0981 0.67 -1.3 990,967 - Synpcc7942_0981 0.69 -0.6 990,967 - Synpcc7942_0981 0.69 -4.3 990,978 - Synpcc7942_0981 0.69 -1.2 991,001 - Synpcc7942_0981 0.71 -4.1 991,022 - Synpcc7942_0981 0.72 -0.9 991,027 + Synpcc7942_0981 0.72 -1.5 991,037 + Synpcc7942_0981 0.73 -0.6 991,105 - Synpcc7942_0981 0.77 -1.5 991,181 - Synpcc7942_0981 0.81 -1.3 991,212 - Synpcc7942_0981 0.83 +3.4 991,236 + Synpcc7942_0981 0.85 -1.1 991,244 - Synpcc7942_0981 0.85 -0.2 991,249 + Synpcc7942_0981 0.85 -2.3 991,318 + Synpcc7942_0981 0.90 -1.0 991,341 - -0.9 991,348 - +2.1 991,348 - -2.3 991,350 - -0.7 991,350 - -2.6 991,420 - -1.0 991,432 + -2.0 991,432 + -1.4 991,440 - -1.6 991,465 - -0.0 991,478 + -1.7 991,478 + -1.4 991,499 + -3.4 991,499 + -0.6 991,499 + -1.3 991,507 - -0.4 991,509 + +0.1 991,526 + -0.0 991,534 - -2.1 991,536 - -3.1 991,544 - -1.3 991,548 + +1.1 991,548 + +0.2 991,554 - -0.6 991,555 + +1.1 991,556 - -0.6 991,556 - -1.0 991,567 + -1.7 991,580 + +1.2 991,584 + -1.1 991,657 + Synpcc7942_0982 0.17 -1.3 991,660 - Synpcc7942_0982 0.17 -2.7 991,660 - Synpcc7942_0982 0.17 -0.6 991,684 - Synpcc7942_0982 0.21 -2.7 991,693 + Synpcc7942_0982 0.23 -2.3 991,706 - Synpcc7942_0982 0.25 -1.1 991,706 - Synpcc7942_0982 0.25 +0.3 991,706 - Synpcc7942_0982 0.25 -0.3 991,778 + Synpcc7942_0982 0.37 -3.3 991,786 - Synpcc7942_0982 0.38 -1.6 991,806 - Synpcc7942_0982 0.41 -0.4 991,904 - Synpcc7942_0982 0.57 -0.5 991,927 - Synpcc7942_0982 0.61 -1.8 991,931 + Synpcc7942_0982 0.61 -0.2 992,183 + -1.0 992,183 + -1.7 992,183 + -0.9 992,183 + -0.9 992,191 - -2.0 992,213 - -1.6 992,219 + -3.8 992,257 + deoC Synpcc7942_0983 0.10 +0.2 992,265 - deoC Synpcc7942_0983 0.11 -1.1 992,320 - deoC Synpcc7942_0983 0.19 -0.2 992,325 - deoC Synpcc7942_0983 0.20 -2.7 992,343 - deoC Synpcc7942_0983 0.23 +0.2 992,353 + deoC Synpcc7942_0983 0.24 -3.1 992,368 + deoC Synpcc7942_0983 0.26 +1.5 992,370 + deoC Synpcc7942_0983 0.27 +1.0 992,376 - deoC Synpcc7942_0983 0.28 -1.4 992,426 + deoC Synpcc7942_0983 0.35 -0.9 992,426 + deoC Synpcc7942_0983 0.35 -3.6 992,426 + deoC Synpcc7942_0983 0.35 -0.4 992,434 - deoC Synpcc7942_0983 0.36 -0.4 992,434 - deoC Synpcc7942_0983 0.36 -1.7 992,434 - deoC Synpcc7942_0983 0.36 -0.0 992,434 - deoC Synpcc7942_0983 0.36 -0.4 992,434 - deoC Synpcc7942_0983 0.36 -2.9 992,434 - deoC Synpcc7942_0983 0.36 -2.5 992,468 + deoC Synpcc7942_0983 0.41 -1.0 992,492 - deoC Synpcc7942_0983 0.44 -1.1 992,492 - deoC Synpcc7942_0983 0.44 +0.7 992,514 + deoC Synpcc7942_0983 0.48 -1.9 992,517 - deoC Synpcc7942_0983 0.48 -0.7 992,518 - deoC Synpcc7942_0983 0.48 -2.6 992,523 + deoC Synpcc7942_0983 0.49 -1.9 992,557 - deoC Synpcc7942_0983 0.54 +1.0 992,557 - deoC Synpcc7942_0983 0.54 -2.4 992,562 + deoC Synpcc7942_0983 0.55 -3.2 992,613 - deoC Synpcc7942_0983 0.62 -0.9 992,624 + deoC Synpcc7942_0983 0.64 -0.4 992,629 + deoC Synpcc7942_0983 0.64 -2.3 992,631 - deoC Synpcc7942_0983 0.65 -2.4 992,637 - deoC Synpcc7942_0983 0.66 -0.4 992,657 + deoC Synpcc7942_0983 0.68 +1.6 992,660 - deoC Synpcc7942_0983 0.69 -1.0 992,665 - deoC Synpcc7942_0983 0.70 -1.1 992,665 - deoC Synpcc7942_0983 0.70 -0.2 992,665 - deoC Synpcc7942_0983 0.70 -3.1 992,665 - deoC Synpcc7942_0983 0.70 -3.0 992,685 + deoC Synpcc7942_0983 0.72 -0.1 992,693 - deoC Synpcc7942_0983 0.74 -2.5 992,718 + deoC Synpcc7942_0983 0.77 -0.2 992,765 + deoC Synpcc7942_0983 0.84 +0.7 992,786 - deoC Synpcc7942_0983 0.87 +1.1 992,796 + deoC Synpcc7942_0983 0.89 -0.2 992,809 + -0.0 992,829 - -1.2 992,840 + +2.9 992,842 - -1.3 992,849 - -0.6 992,859 - -1.4 992,859 - -1.7 992,867 + -0.4 992,875 - -0.2 992,878 + +0.2 992,886 - -0.4
Or see this region's nucleotide sequence