Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0960 and Synpcc7942_0961 are separated by 88 nucleotides Synpcc7942_0961 and sun are separated by 17 nucleotides
Synpcc7942_0960: Synpcc7942_0960 - ATPase, at 967,595 to 968,848
_0960
Synpcc7942_0961: Synpcc7942_0961 - cell envelope-related function transcriptional attenuator common domain, at 968,937 to 969,950
_0961
Synpcc7942_0962: sun - sun protein, at 969,968 to 971,323
sun
Position (kb) 968
969
970 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 968.682 kb on + strand, within Synpcc7942_0960 at 968.773 kb on + strand at 968.867 kb on - strand at 968.889 kb on - strand at 968.908 kb on + strand at 968.912 kb on - strand at 968.916 kb on - strand at 968.916 kb on - strand at 968.922 kb on - strand at 968.985 kb on + strand at 969.005 kb on + strand at 969.006 kb on - strand at 969.017 kb on + strand at 969.029 kb on + strand at 969.044 kb on - strand, within Synpcc7942_0961 at 969.061 kb on - strand, within Synpcc7942_0961 at 969.093 kb on + strand, within Synpcc7942_0961 at 969.093 kb on + strand, within Synpcc7942_0961 at 969.101 kb on - strand, within Synpcc7942_0961 at 969.101 kb on - strand, within Synpcc7942_0961 at 969.101 kb on - strand, within Synpcc7942_0961 at 969.122 kb on - strand, within Synpcc7942_0961 at 969.140 kb on - strand, within Synpcc7942_0961 at 969.146 kb on + strand, within Synpcc7942_0961 at 969.209 kb on - strand, within Synpcc7942_0961 at 969.213 kb on - strand, within Synpcc7942_0961 at 969.272 kb on - strand, within Synpcc7942_0961 at 969.298 kb on - strand, within Synpcc7942_0961 at 969.329 kb on + strand, within Synpcc7942_0961 at 969.382 kb on + strand, within Synpcc7942_0961 at 969.407 kb on + strand, within Synpcc7942_0961 at 969.429 kb on - strand, within Synpcc7942_0961 at 969.431 kb on + strand, within Synpcc7942_0961 at 969.441 kb on + strand, within Synpcc7942_0961 at 969.451 kb on - strand, within Synpcc7942_0961 at 969.453 kb on + strand, within Synpcc7942_0961 at 969.460 kb on + strand, within Synpcc7942_0961 at 969.472 kb on + strand, within Synpcc7942_0961 at 969.472 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.512 kb on + strand, within Synpcc7942_0961 at 969.531 kb on + strand, within Synpcc7942_0961 at 969.539 kb on - strand, within Synpcc7942_0961 at 969.554 kb on + strand, within Synpcc7942_0961 at 969.558 kb on + strand, within Synpcc7942_0961 at 969.566 kb on - strand, within Synpcc7942_0961 at 969.566 kb on - strand, within Synpcc7942_0961 at 969.586 kb on - strand, within Synpcc7942_0961 at 969.587 kb on + strand, within Synpcc7942_0961 at 969.607 kb on - strand, within Synpcc7942_0961 at 969.640 kb on + strand, within Synpcc7942_0961 at 969.640 kb on + strand at 969.648 kb on - strand, within Synpcc7942_0961 at 969.663 kb on + strand, within Synpcc7942_0961 at 969.663 kb on + strand at 969.664 kb on + strand, within Synpcc7942_0961 at 969.670 kb on - strand, within Synpcc7942_0961 at 969.672 kb on - strand, within Synpcc7942_0961 at 969.674 kb on + strand, within Synpcc7942_0961 at 969.674 kb on + strand, within Synpcc7942_0961 at 969.679 kb on + strand, within Synpcc7942_0961 at 969.682 kb on - strand, within Synpcc7942_0961 at 969.698 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.708 kb on - strand, within Synpcc7942_0961 at 969.745 kb on - strand, within Synpcc7942_0961 at 969.767 kb on - strand, within Synpcc7942_0961 at 969.785 kb on + strand, within Synpcc7942_0961 at 969.841 kb on + strand, within Synpcc7942_0961 at 969.846 kb on + strand, within Synpcc7942_0961 at 969.849 kb on - strand at 969.862 kb on - strand at 969.862 kb on - strand at 969.872 kb on - strand at 969.884 kb on - strand at 969.892 kb on + strand at 969.929 kb on + strand at 969.937 kb on - strand at 969.942 kb on - strand at 969.961 kb on + strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.978 kb on - strand at 969.997 kb on - strand at 970.053 kb on - strand at 970.058 kb on - strand at 970.061 kb on + strand at 970.062 kb on + strand at 970.077 kb on + strand at 970.084 kb on - strand at 970.092 kb on + strand at 970.143 kb on + strand, within sun at 970.181 kb on + strand, within sun at 970.210 kb on + strand, within sun at 970.210 kb on + strand, within sun at 970.266 kb on + strand, within sun at 970.295 kb on + strand, within sun at 970.295 kb on + strand, within sun at 970.304 kb on - strand, within sun at 970.307 kb on + strand, within sun at 970.307 kb on + strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.325 kb on - strand, within sun at 970.356 kb on + strand, within sun at 970.356 kb on + strand, within sun at 970.364 kb on - strand, within sun at 970.381 kb on + strand, within sun at 970.381 kb on + strand, within sun at 970.395 kb on - strand, within sun at 970.405 kb on - strand, within sun at 970.428 kb on + strand, within sun at 970.429 kb on - strand, within sun at 970.436 kb on - strand, within sun at 970.484 kb on - strand, within sun at 970.540 kb on - strand, within sun at 970.587 kb on + strand, within sun at 970.592 kb on + strand, within sun at 970.592 kb on + strand, within sun at 970.618 kb on - strand, within sun at 970.622 kb on + strand, within sun at 970.651 kb on + strand, within sun at 970.669 kb on - strand, within sun at 970.676 kb on - strand, within sun at 970.686 kb on - strand, within sun at 970.721 kb on + strand, within sun at 970.730 kb on - strand, within sun at 970.743 kb on + strand, within sun at 970.751 kb on - strand, within sun at 970.751 kb on - strand, within sun at 970.751 kb on - strand at 970.773 kb on - strand, within sun at 970.773 kb on - strand, within sun at 970.814 kb on + strand, within sun at 970.814 kb on + strand, within sun at 970.833 kb on + strand, within sun at 970.833 kb on + strand, within sun at 970.838 kb on + strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.851 kb on - strand, within sun at 970.862 kb on + strand, within sun
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 968,682 + Synpcc7942_0960 0.87 -0.6 968,773 + -0.9 968,867 - -0.2 968,889 - +0.6 968,908 + -1.8 968,912 - +0.8 968,916 - -0.8 968,916 - -0.5 968,922 - -0.2 968,985 + +0.5 969,005 + -2.6 969,006 - -1.7 969,017 + +0.1 969,029 + -0.9 969,044 - Synpcc7942_0961 0.11 -0.1 969,061 - Synpcc7942_0961 0.12 -2.9 969,093 + Synpcc7942_0961 0.15 +0.0 969,093 + Synpcc7942_0961 0.15 -0.9 969,101 - Synpcc7942_0961 0.16 -1.2 969,101 - Synpcc7942_0961 0.16 -0.5 969,101 - Synpcc7942_0961 0.16 -0.7 969,122 - Synpcc7942_0961 0.18 -0.6 969,140 - Synpcc7942_0961 0.20 -0.6 969,146 + Synpcc7942_0961 0.21 -1.4 969,209 - Synpcc7942_0961 0.27 -1.8 969,213 - Synpcc7942_0961 0.27 -2.5 969,272 - Synpcc7942_0961 0.33 -2.8 969,298 - Synpcc7942_0961 0.36 -0.0 969,329 + Synpcc7942_0961 0.39 -3.3 969,382 + Synpcc7942_0961 0.44 +0.5 969,407 + Synpcc7942_0961 0.46 -1.2 969,429 - Synpcc7942_0961 0.49 +2.1 969,431 + Synpcc7942_0961 0.49 -1.2 969,441 + Synpcc7942_0961 0.50 -3.4 969,451 - Synpcc7942_0961 0.51 -0.5 969,453 + Synpcc7942_0961 0.51 -2.0 969,460 + Synpcc7942_0961 0.52 +0.5 969,472 + Synpcc7942_0961 0.53 +1.2 969,472 + Synpcc7942_0961 0.53 -0.4 969,512 + Synpcc7942_0961 0.57 -0.3 969,512 + Synpcc7942_0961 0.57 -1.5 969,512 + Synpcc7942_0961 0.57 +0.7 969,512 + Synpcc7942_0961 0.57 +0.3 969,512 + Synpcc7942_0961 0.57 -2.0 969,531 + Synpcc7942_0961 0.59 -2.2 969,539 - Synpcc7942_0961 0.59 +0.4 969,554 + Synpcc7942_0961 0.61 -1.6 969,558 + Synpcc7942_0961 0.61 +0.4 969,566 - Synpcc7942_0961 0.62 +0.2 969,566 - Synpcc7942_0961 0.62 -2.5 969,586 - Synpcc7942_0961 0.64 -0.5 969,587 + Synpcc7942_0961 0.64 -3.2 969,607 - Synpcc7942_0961 0.66 +2.6 969,640 + Synpcc7942_0961 0.69 +0.5 969,640 + +0.5 969,648 - Synpcc7942_0961 0.70 -0.9 969,663 + Synpcc7942_0961 0.72 -1.4 969,663 + +1.0 969,664 + Synpcc7942_0961 0.72 -1.0 969,670 - Synpcc7942_0961 0.72 +2.5 969,672 - Synpcc7942_0961 0.72 -0.1 969,674 + Synpcc7942_0961 0.73 -1.8 969,674 + Synpcc7942_0961 0.73 -1.0 969,679 + Synpcc7942_0961 0.73 -1.8 969,682 - Synpcc7942_0961 0.73 -1.2 969,698 - Synpcc7942_0961 0.75 +1.5 969,708 - Synpcc7942_0961 0.76 -0.3 969,708 - Synpcc7942_0961 0.76 -0.9 969,708 - Synpcc7942_0961 0.76 -1.3 969,708 - Synpcc7942_0961 0.76 -2.0 969,745 - Synpcc7942_0961 0.80 -1.4 969,767 - Synpcc7942_0961 0.82 -1.5 969,785 + Synpcc7942_0961 0.84 +2.5 969,841 + Synpcc7942_0961 0.89 -1.8 969,846 + Synpcc7942_0961 0.90 -0.5 969,849 - -0.6 969,862 - -2.2 969,862 - +0.7 969,872 - +2.5 969,884 - -1.2 969,892 + +0.4 969,929 + +0.2 969,937 - +0.2 969,942 - +1.2 969,961 + -0.5 969,978 - -3.8 969,978 - -1.0 969,978 - -1.8 969,978 - -0.3 969,978 - -2.9 969,997 - -0.5 970,053 - +0.7 970,058 - +1.0 970,061 + +0.7 970,062 + +0.4 970,077 + -1.2 970,084 - +0.8 970,092 + +1.7 970,143 + sun Synpcc7942_0962 0.13 -0.3 970,181 + sun Synpcc7942_0962 0.16 +1.3 970,210 + sun Synpcc7942_0962 0.18 -0.4 970,210 + sun Synpcc7942_0962 0.18 +0.5 970,266 + sun Synpcc7942_0962 0.22 -0.3 970,295 + sun Synpcc7942_0962 0.24 -0.5 970,295 + sun Synpcc7942_0962 0.24 +0.4 970,304 - sun Synpcc7942_0962 0.25 +0.7 970,307 + sun Synpcc7942_0962 0.25 +3.0 970,307 + sun Synpcc7942_0962 0.25 +1.1 970,315 - sun Synpcc7942_0962 0.26 -3.1 970,315 - sun Synpcc7942_0962 0.26 -1.5 970,315 - sun Synpcc7942_0962 0.26 -2.0 970,315 - sun Synpcc7942_0962 0.26 -0.3 970,315 - sun Synpcc7942_0962 0.26 +0.6 970,315 - sun Synpcc7942_0962 0.26 -1.2 970,325 - sun Synpcc7942_0962 0.26 +1.6 970,356 + sun Synpcc7942_0962 0.29 +3.0 970,356 + sun Synpcc7942_0962 0.29 -0.0 970,364 - sun Synpcc7942_0962 0.29 -2.5 970,381 + sun Synpcc7942_0962 0.30 +4.3 970,381 + sun Synpcc7942_0962 0.30 +1.1 970,395 - sun Synpcc7942_0962 0.31 -0.0 970,405 - sun Synpcc7942_0962 0.32 -0.3 970,428 + sun Synpcc7942_0962 0.34 +3.7 970,429 - sun Synpcc7942_0962 0.34 -0.6 970,436 - sun Synpcc7942_0962 0.35 -1.0 970,484 - sun Synpcc7942_0962 0.38 +0.2 970,540 - sun Synpcc7942_0962 0.42 -2.9 970,587 + sun Synpcc7942_0962 0.46 -0.7 970,592 + sun Synpcc7942_0962 0.46 +0.6 970,592 + sun Synpcc7942_0962 0.46 -0.9 970,618 - sun Synpcc7942_0962 0.48 +3.0 970,622 + sun Synpcc7942_0962 0.48 -1.4 970,651 + sun Synpcc7942_0962 0.50 +1.0 970,669 - sun Synpcc7942_0962 0.52 +1.2 970,676 - sun Synpcc7942_0962 0.52 -2.2 970,686 - sun Synpcc7942_0962 0.53 -0.7 970,721 + sun Synpcc7942_0962 0.56 -0.9 970,730 - sun Synpcc7942_0962 0.56 +0.3 970,743 + sun Synpcc7942_0962 0.57 -1.9 970,751 - sun Synpcc7942_0962 0.58 +0.1 970,751 - sun Synpcc7942_0962 0.58 +3.2 970,751 - +1.5 970,773 - sun Synpcc7942_0962 0.59 +0.5 970,773 - sun Synpcc7942_0962 0.59 -4.0 970,814 + sun Synpcc7942_0962 0.62 -1.3 970,814 + sun Synpcc7942_0962 0.62 -1.0 970,833 + sun Synpcc7942_0962 0.64 +3.0 970,833 + sun Synpcc7942_0962 0.64 -0.3 970,838 + sun Synpcc7942_0962 0.64 -2.4 970,841 - sun Synpcc7942_0962 0.64 +0.5 970,841 - sun Synpcc7942_0962 0.64 +1.0 970,841 - sun Synpcc7942_0962 0.64 +1.0 970,841 - sun Synpcc7942_0962 0.64 -1.4 970,841 - sun Synpcc7942_0962 0.64 -2.7 970,851 - sun Synpcc7942_0962 0.65 -0.6 970,862 + sun Synpcc7942_0962 0.66 +1.0
Or see this region's nucleotide sequence