Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0943

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsH and argD are separated by 387 nucleotidesargD and folC overlap by 4 nucleotides Synpcc7942_0942: ftsH - FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41, at 947,957 to 949,849 ftsH Synpcc7942_0943: argD - acetylornithine aminotransferase, at 950,237 to 951,505 argD Synpcc7942_0944: folC - FolC bifunctional protein, at 951,502 to 952,740 folC Position (kb) 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 949.877 kb on - strandat 949.935 kb on + strandat 949.943 kb on - strandat 949.967 kb on + strandat 949.994 kb on + strandat 949.994 kb on + strandat 949.994 kb on + strandat 950.002 kb on + strandat 950.002 kb on - strandat 950.002 kb on - strandat 950.002 kb on - strandat 950.010 kb on - strandat 950.010 kb on - strandat 950.010 kb on - strandat 950.011 kb on - strandat 950.016 kb on + strandat 950.039 kb on + strandat 950.048 kb on + strandat 950.048 kb on - strandat 950.050 kb on + strandat 950.058 kb on + strandat 950.058 kb on - strandat 950.060 kb on + strandat 950.100 kb on - strandat 950.116 kb on + strandat 950.152 kb on + strandat 950.157 kb on + strandat 950.162 kb on - strandat 950.171 kb on + strandat 950.172 kb on - strandat 950.215 kb on - strandat 950.233 kb on - strandat 951.518 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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949,877 - -2.4
949,935 + -0.4
949,943 - -1.5
949,967 + -0.2
949,994 + +1.3
949,994 + -1.9
949,994 + -2.2
950,002 + +1.8
950,002 - +0.2
950,002 - +2.0
950,002 - -2.0
950,010 - -0.5
950,010 - +1.5
950,010 - +2.3
950,011 - +1.0
950,016 + -0.2
950,039 + -1.1
950,048 + +0.2
950,048 - +1.4
950,050 + +3.8
950,058 + +3.0
950,058 - +3.9
950,060 + +1.9
950,100 - +2.9
950,116 + +2.1
950,152 + +4.6
950,157 + -0.0
950,162 - -2.3
950,171 + +3.5
950,172 - +0.7
950,215 - +1.8
950,233 - -2.1
951,518 - -1.5

Or see this region's nucleotide sequence