Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysC and Synpcc7942_0940 are separated by 44 nucleotides Synpcc7942_0940 and Synpcc7942_0941 are separated by 424 nucleotides Synpcc7942_0941 and ftsH are separated by 183 nucleotides
Synpcc7942_0939: cysC - adenylylsulfate kinase, at 944,618 to 945,244
cysC
Synpcc7942_0940: Synpcc7942_0940 - transcriptional regulator, XRE family, at 945,289 to 945,639
_0940
Synpcc7942_0941: Synpcc7942_0941 - ATPase, at 946,064 to 947,773
_0941
Synpcc7942_0942: ftsH - FtsH peptidase homologue, chloroplast. Metallo peptidase. MEROPS family M41, at 947,957 to 949,849
ftsH
Position (kb) 946
947
948 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 945.191 kb on + strand at 945.199 kb on + strand at 945.199 kb on + strand at 945.201 kb on + strand at 945.270 kb on - strand at 945.285 kb on - strand at 945.285 kb on - strand at 945.290 kb on - strand at 945.323 kb on + strand at 945.323 kb on + strand at 945.340 kb on + strand, within Synpcc7942_0940 at 945.343 kb on + strand, within Synpcc7942_0940 at 945.358 kb on + strand, within Synpcc7942_0940 at 945.365 kb on + strand, within Synpcc7942_0940 at 945.377 kb on + strand, within Synpcc7942_0940 at 945.385 kb on - strand, within Synpcc7942_0940 at 945.390 kb on - strand, within Synpcc7942_0940 at 945.512 kb on + strand, within Synpcc7942_0940 at 945.684 kb on + strand at 945.707 kb on - strand at 945.758 kb on - strand at 945.758 kb on - strand at 945.760 kb on + strand at 945.760 kb on + strand at 945.768 kb on - strand at 945.794 kb on + strand at 945.812 kb on - strand at 945.812 kb on - strand at 945.835 kb on - strand at 945.874 kb on + strand at 945.887 kb on + strand at 945.904 kb on - strand at 945.920 kb on + strand at 946.006 kb on + strand at 946.062 kb on + strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.143 kb on + strand at 946.310 kb on - strand, within Synpcc7942_0941 at 946.465 kb on - strand, within Synpcc7942_0941 at 946.490 kb on + strand, within Synpcc7942_0941 at 946.507 kb on + strand, within Synpcc7942_0941 at 946.612 kb on - strand, within Synpcc7942_0941 at 946.615 kb on + strand, within Synpcc7942_0941 at 946.646 kb on - strand, within Synpcc7942_0941 at 946.646 kb on - strand, within Synpcc7942_0941 at 946.670 kb on + strand, within Synpcc7942_0941 at 946.670 kb on + strand, within Synpcc7942_0941 at 946.678 kb on + strand, within Synpcc7942_0941 at 946.685 kb on - strand, within Synpcc7942_0941 at 946.686 kb on - strand, within Synpcc7942_0941 at 946.690 kb on - strand, within Synpcc7942_0941 at 946.754 kb on + strand, within Synpcc7942_0941 at 946.754 kb on + strand, within Synpcc7942_0941 at 946.762 kb on - strand, within Synpcc7942_0941 at 946.796 kb on + strand, within Synpcc7942_0941 at 946.804 kb on + strand, within Synpcc7942_0941 at 946.814 kb on + strand, within Synpcc7942_0941 at 946.835 kb on - strand, within Synpcc7942_0941 at 946.916 kb on - strand, within Synpcc7942_0941 at 947.013 kb on + strand, within Synpcc7942_0941 at 947.048 kb on + strand, within Synpcc7942_0941 at 947.100 kb on + strand, within Synpcc7942_0941 at 947.153 kb on + strand, within Synpcc7942_0941 at 947.171 kb on + strand, within Synpcc7942_0941 at 947.393 kb on - strand, within Synpcc7942_0941 at 947.451 kb on - strand, within Synpcc7942_0941 at 947.464 kb on + strand, within Synpcc7942_0941 at 947.675 kb on + strand at 947.704 kb on - strand at 947.711 kb on + strand at 947.718 kb on + strand at 947.719 kb on - strand at 947.753 kb on - strand at 947.754 kb on - strand at 947.784 kb on - strand at 947.853 kb on + strand at 947.861 kb on - strand at 947.866 kb on + strand at 947.869 kb on - strand at 947.942 kb on + strand at 947.942 kb on + strand at 947.943 kb on - strand at 947.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 945,191 + -0.0 945,199 + -2.9 945,199 + -1.0 945,201 + -1.2 945,270 - +0.5 945,285 - -2.2 945,285 - -0.5 945,290 - -0.5 945,323 + +1.0 945,323 + -0.2 945,340 + Synpcc7942_0940 0.15 +1.4 945,343 + Synpcc7942_0940 0.15 -0.5 945,358 + Synpcc7942_0940 0.20 +0.5 945,365 + Synpcc7942_0940 0.22 +0.4 945,377 + Synpcc7942_0940 0.25 -2.3 945,385 - Synpcc7942_0940 0.27 +1.5 945,390 - Synpcc7942_0940 0.29 +1.1 945,512 + Synpcc7942_0940 0.64 +1.8 945,684 + +2.3 945,707 - +2.3 945,758 - -1.7 945,758 - -0.9 945,760 + -2.0 945,760 + -0.3 945,768 - -1.0 945,794 + -1.2 945,812 - -2.3 945,812 - -2.4 945,835 - -0.3 945,874 + -0.3 945,887 + -2.5 945,904 - -5.1 945,920 + +0.1 946,006 + +1.8 946,062 + +0.3 946,070 - -1.8 946,070 - -2.5 946,070 - +5.2 946,070 - -1.0 946,070 - +1.0 946,070 - +2.3 946,143 + -1.6 946,310 - Synpcc7942_0941 0.14 -3.0 946,465 - Synpcc7942_0941 0.23 -0.3 946,490 + Synpcc7942_0941 0.25 -0.6 946,507 + Synpcc7942_0941 0.26 -2.7 946,612 - Synpcc7942_0941 0.32 -1.2 946,615 + Synpcc7942_0941 0.32 -2.5 946,646 - Synpcc7942_0941 0.34 -1.6 946,646 - Synpcc7942_0941 0.34 -0.8 946,670 + Synpcc7942_0941 0.35 +0.2 946,670 + Synpcc7942_0941 0.35 -0.8 946,678 + Synpcc7942_0941 0.36 -0.6 946,685 - Synpcc7942_0941 0.36 -2.7 946,686 - Synpcc7942_0941 0.36 -4.2 946,690 - Synpcc7942_0941 0.37 -1.2 946,754 + Synpcc7942_0941 0.40 +0.5 946,754 + Synpcc7942_0941 0.40 -1.2 946,762 - Synpcc7942_0941 0.41 -0.5 946,796 + Synpcc7942_0941 0.43 -3.2 946,804 + Synpcc7942_0941 0.43 -1.6 946,814 + Synpcc7942_0941 0.44 -0.5 946,835 - Synpcc7942_0941 0.45 -1.5 946,916 - Synpcc7942_0941 0.50 -1.5 947,013 + Synpcc7942_0941 0.55 -1.3 947,048 + Synpcc7942_0941 0.58 -1.2 947,100 + Synpcc7942_0941 0.61 -0.6 947,153 + Synpcc7942_0941 0.64 -1.0 947,171 + Synpcc7942_0941 0.65 -3.4 947,393 - Synpcc7942_0941 0.78 -1.5 947,451 - Synpcc7942_0941 0.81 -2.1 947,464 + Synpcc7942_0941 0.82 +0.2 947,675 + -1.0 947,704 - -2.2 947,711 + -1.3 947,718 + -3.9 947,719 - -0.8 947,753 - -1.6 947,754 - -0.3 947,784 - -2.3 947,853 + +0.2 947,861 - +1.3 947,866 + +1.5 947,869 - -0.9 947,942 + -1.2 947,942 + +0.2 947,943 - -2.0 947,949 - -2.2
Or see this region's nucleotide sequence