Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0907 and Synpcc7942_0908 are separated by 113 nucleotides Synpcc7942_0908 and ycf57 are separated by 147 nucleotides ycf57 and Synpcc7942_0910 are separated by 68 nucleotides Synpcc7942_0910 and Synpcc7942_0911 are separated by 9 nucleotides Synpcc7942_0911 and dnaX are separated by 75 nucleotides
Synpcc7942_0907: Synpcc7942_0907 - hypothetical protein, at 916,954 to 917,166
_0907
Synpcc7942_0908: Synpcc7942_0908 - hypothetical protein, at 917,280 to 917,987
_0908
Synpcc7942_0909: ycf57 - HesB/YadR/YfhF, at 918,135 to 918,491
ycf57
Synpcc7942_0910: Synpcc7942_0910 - hypothetical protein, at 918,560 to 918,988
_0910
Synpcc7942_0911: Synpcc7942_0911 - hypothetical protein, at 918,998 to 919,249
_0911
Synpcc7942_0912: dnaX - DNA polymerase III, tau subunit, at 919,325 to 921,283
dnaX
Position (kb) 918
919 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 917.202 kb on - strand at 917.204 kb on + strand at 917.204 kb on + strand at 917.204 kb on + strand at 917.212 kb on - strand at 917.212 kb on - strand at 917.213 kb on + strand at 917.213 kb on + strand at 917.213 kb on + strand at 917.221 kb on - strand at 917.221 kb on - strand at 917.231 kb on + strand at 917.246 kb on + strand at 917.246 kb on + strand at 917.246 kb on + strand at 917.253 kb on - strand at 917.254 kb on - strand at 917.254 kb on - strand at 917.254 kb on - strand at 917.257 kb on + strand at 917.257 kb on + strand at 917.265 kb on - strand at 917.265 kb on - strand at 917.265 kb on - strand at 917.278 kb on + strand at 917.285 kb on + strand at 917.286 kb on - strand at 917.286 kb on - strand at 917.286 kb on - strand at 917.353 kb on - strand, within Synpcc7942_0908 at 917.367 kb on + strand, within Synpcc7942_0908 at 917.399 kb on - strand, within Synpcc7942_0908 at 917.399 kb on - strand, within Synpcc7942_0908 at 917.405 kb on + strand, within Synpcc7942_0908 at 917.412 kb on - strand, within Synpcc7942_0908 at 917.413 kb on - strand, within Synpcc7942_0908 at 917.492 kb on + strand, within Synpcc7942_0908 at 917.500 kb on - strand, within Synpcc7942_0908 at 917.505 kb on + strand, within Synpcc7942_0908 at 917.513 kb on + strand, within Synpcc7942_0908 at 917.529 kb on + strand, within Synpcc7942_0908 at 917.557 kb on + strand, within Synpcc7942_0908 at 917.587 kb on - strand, within Synpcc7942_0908 at 917.616 kb on - strand, within Synpcc7942_0908 at 917.628 kb on + strand, within Synpcc7942_0908 at 917.702 kb on - strand, within Synpcc7942_0908 at 917.727 kb on + strand, within Synpcc7942_0908 at 917.786 kb on - strand, within Synpcc7942_0908 at 917.798 kb on - strand, within Synpcc7942_0908 at 917.828 kb on + strand, within Synpcc7942_0908 at 917.828 kb on + strand, within Synpcc7942_0908 at 917.841 kb on + strand, within Synpcc7942_0908 at 917.849 kb on - strand, within Synpcc7942_0908 at 917.876 kb on + strand, within Synpcc7942_0908 at 917.884 kb on - strand, within Synpcc7942_0908 at 917.899 kb on + strand, within Synpcc7942_0908 at 917.899 kb on - strand, within Synpcc7942_0908 at 917.910 kb on - strand, within Synpcc7942_0908 at 917.917 kb on - strand at 917.929 kb on - strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.988 kb on + strand at 917.995 kb on + strand at 917.996 kb on - strand at 917.996 kb on - strand at 917.996 kb on - strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on + strand at 918.003 kb on - strand at 918.011 kb on - strand at 918.011 kb on - strand at 918.011 kb on - strand at 918.016 kb on - strand at 918.023 kb on - strand at 918.029 kb on - strand at 918.048 kb on + strand at 918.058 kb on - strand at 918.074 kb on - strand at 918.112 kb on - strand at 918.124 kb on + strand at 918.132 kb on - strand at 918.205 kb on - strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.275 kb on + strand, within ycf57 at 918.278 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.283 kb on - strand, within ycf57 at 918.298 kb on + strand at 918.306 kb on - strand, within ycf57 at 918.306 kb on - strand, within ycf57 at 918.335 kb on - strand, within ycf57 at 918.361 kb on - strand, within ycf57 at 918.424 kb on - strand, within ycf57 at 918.437 kb on + strand, within ycf57 at 918.443 kb on + strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.451 kb on - strand, within ycf57 at 918.453 kb on + strand, within ycf57 at 918.461 kb on - strand at 918.476 kb on + strand at 918.516 kb on + strand at 918.521 kb on + strand at 918.521 kb on + strand at 918.524 kb on - strand at 918.589 kb on + strand at 918.618 kb on - strand, within Synpcc7942_0910 at 918.668 kb on + strand, within Synpcc7942_0910 at 918.676 kb on - strand, within Synpcc7942_0910 at 918.679 kb on + strand, within Synpcc7942_0910 at 918.688 kb on + strand, within Synpcc7942_0910 at 918.689 kb on + strand, within Synpcc7942_0910 at 918.742 kb on + strand, within Synpcc7942_0910 at 918.769 kb on + strand, within Synpcc7942_0910 at 918.781 kb on + strand, within Synpcc7942_0910 at 918.782 kb on - strand, within Synpcc7942_0910 at 918.796 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.829 kb on + strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.837 kb on - strand, within Synpcc7942_0910 at 918.847 kb on + strand, within Synpcc7942_0910 at 918.863 kb on - strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand at 918.882 kb on + strand, within Synpcc7942_0910 at 918.882 kb on + strand, within Synpcc7942_0910 at 918.894 kb on + strand, within Synpcc7942_0910 at 918.902 kb on - strand, within Synpcc7942_0910 at 918.902 kb on - strand, within Synpcc7942_0910 at 918.923 kb on + strand, within Synpcc7942_0910 at 918.931 kb on + strand, within Synpcc7942_0910 at 918.931 kb on - strand, within Synpcc7942_0910 at 918.951 kb on + strand at 918.953 kb on - strand at 918.958 kb on - strand at 918.967 kb on + strand at 918.975 kb on - strand at 918.983 kb on + strand at 918.983 kb on + strand at 918.983 kb on + strand at 918.995 kb on - strand at 919.013 kb on - strand at 919.050 kb on + strand, within Synpcc7942_0911 at 919.067 kb on - strand at 919.088 kb on + strand, within Synpcc7942_0911 at 919.088 kb on + strand, within Synpcc7942_0911 at 919.094 kb on - strand at 919.096 kb on - strand, within Synpcc7942_0911 at 919.096 kb on - strand, within Synpcc7942_0911 at 919.120 kb on - strand, within Synpcc7942_0911 at 919.127 kb on - strand, within Synpcc7942_0911 at 919.164 kb on + strand, within Synpcc7942_0911 at 919.172 kb on - strand, within Synpcc7942_0911 at 919.172 kb on - strand, within Synpcc7942_0911 at 919.172 kb on - strand, within Synpcc7942_0911 at 919.174 kb on + strand, within Synpcc7942_0911 at 919.190 kb on + strand, within Synpcc7942_0911 at 919.193 kb on - strand, within Synpcc7942_0911 at 919.193 kb on - strand at 919.193 kb on - strand, within Synpcc7942_0911 at 919.198 kb on - strand, within Synpcc7942_0911 at 919.198 kb on - strand, within Synpcc7942_0911 at 919.200 kb on - strand, within Synpcc7942_0911 at 919.207 kb on + strand, within Synpcc7942_0911 at 919.209 kb on - strand, within Synpcc7942_0911 at 919.244 kb on + strand at 919.252 kb on - strand at 919.271 kb on - strand at 919.282 kb on + strand at 919.295 kb on - strand at 919.322 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 917,202 - -2.0 917,204 + +3.8 917,204 + +0.9 917,204 + +0.8 917,212 - +2.3 917,212 - -1.0 917,213 + +2.7 917,213 + +3.3 917,213 + +3.1 917,221 - -1.2 917,221 - +0.1 917,231 + +3.1 917,246 + -2.1 917,246 + -2.3 917,246 + +1.3 917,253 - -0.3 917,254 - -0.2 917,254 - +0.2 917,254 - -2.4 917,257 + -1.9 917,257 + -3.6 917,265 - -1.4 917,265 - -1.5 917,265 - -1.0 917,278 + -3.1 917,285 + -2.0 917,286 - -0.2 917,286 - -3.2 917,286 - +2.8 917,353 - Synpcc7942_0908 0.10 -3.5 917,367 + Synpcc7942_0908 0.12 -1.4 917,399 - Synpcc7942_0908 0.17 -1.8 917,399 - Synpcc7942_0908 0.17 -0.8 917,405 + Synpcc7942_0908 0.18 -2.5 917,412 - Synpcc7942_0908 0.19 -2.9 917,413 - Synpcc7942_0908 0.19 -1.0 917,492 + Synpcc7942_0908 0.30 -5.0 917,500 - Synpcc7942_0908 0.31 -0.2 917,505 + Synpcc7942_0908 0.32 -1.1 917,513 + Synpcc7942_0908 0.33 -3.2 917,529 + Synpcc7942_0908 0.35 -0.9 917,557 + Synpcc7942_0908 0.39 +2.6 917,587 - Synpcc7942_0908 0.43 -2.2 917,616 - Synpcc7942_0908 0.47 -1.3 917,628 + Synpcc7942_0908 0.49 -2.5 917,702 - Synpcc7942_0908 0.60 -1.0 917,727 + Synpcc7942_0908 0.63 +0.2 917,786 - Synpcc7942_0908 0.71 -0.4 917,798 - Synpcc7942_0908 0.73 -3.6 917,828 + Synpcc7942_0908 0.77 -1.6 917,828 + Synpcc7942_0908 0.77 -1.7 917,841 + Synpcc7942_0908 0.79 +0.6 917,849 - Synpcc7942_0908 0.80 -1.9 917,876 + Synpcc7942_0908 0.84 -3.0 917,884 - Synpcc7942_0908 0.85 -2.0 917,899 + Synpcc7942_0908 0.87 -0.2 917,899 - Synpcc7942_0908 0.87 -0.8 917,910 - Synpcc7942_0908 0.89 -3.2 917,917 - -0.9 917,929 - -2.2 917,988 + -1.1 917,988 + -0.9 917,988 + -1.1 917,988 + -1.8 917,995 + -2.3 917,996 - -1.7 917,996 - -0.0 917,996 - -1.4 918,003 + -2.3 918,003 + -0.6 918,003 + -3.3 918,003 + -1.8 918,003 - -0.8 918,011 - -1.1 918,011 - -0.7 918,011 - -1.1 918,016 - -2.6 918,023 - -0.8 918,029 - -1.9 918,048 + -0.2 918,058 - -2.1 918,074 - -2.6 918,112 - -2.2 918,124 + -3.3 918,132 - -1.4 918,205 - ycf57 Synpcc7942_0909 0.20 -1.2 918,275 + ycf57 Synpcc7942_0909 0.39 -1.8 918,275 + ycf57 Synpcc7942_0909 0.39 -1.6 918,275 + ycf57 Synpcc7942_0909 0.39 -2.9 918,275 + ycf57 Synpcc7942_0909 0.39 +0.1 918,275 + ycf57 Synpcc7942_0909 0.39 -1.2 918,275 + ycf57 Synpcc7942_0909 0.39 -2.3 918,275 + ycf57 Synpcc7942_0909 0.39 -1.4 918,275 + ycf57 Synpcc7942_0909 0.39 -1.1 918,275 + ycf57 Synpcc7942_0909 0.39 -0.2 918,278 - ycf57 Synpcc7942_0909 0.40 -0.8 918,283 - ycf57 Synpcc7942_0909 0.41 -2.4 918,283 - ycf57 Synpcc7942_0909 0.41 -3.1 918,283 - ycf57 Synpcc7942_0909 0.41 -1.8 918,283 - ycf57 Synpcc7942_0909 0.41 -2.8 918,283 - ycf57 Synpcc7942_0909 0.41 -6.0 918,283 - ycf57 Synpcc7942_0909 0.41 -1.7 918,283 - ycf57 Synpcc7942_0909 0.41 -3.2 918,283 - ycf57 Synpcc7942_0909 0.41 -1.4 918,298 + -0.0 918,306 - ycf57 Synpcc7942_0909 0.48 -0.4 918,306 - ycf57 Synpcc7942_0909 0.48 -0.6 918,335 - ycf57 Synpcc7942_0909 0.56 -1.0 918,361 - ycf57 Synpcc7942_0909 0.63 -4.0 918,424 - ycf57 Synpcc7942_0909 0.81 -0.0 918,437 + ycf57 Synpcc7942_0909 0.85 -0.2 918,443 + ycf57 Synpcc7942_0909 0.86 -4.6 918,451 - ycf57 Synpcc7942_0909 0.89 -1.5 918,451 - ycf57 Synpcc7942_0909 0.89 -0.9 918,451 - ycf57 Synpcc7942_0909 0.89 -4.2 918,451 - ycf57 Synpcc7942_0909 0.89 -0.4 918,453 + ycf57 Synpcc7942_0909 0.89 -1.2 918,461 - -3.0 918,476 + -2.7 918,516 + -1.9 918,521 + -1.3 918,521 + -1.0 918,524 - -0.7 918,589 + -0.9 918,618 - Synpcc7942_0910 0.14 -1.6 918,668 + Synpcc7942_0910 0.25 -1.9 918,676 - Synpcc7942_0910 0.27 -0.5 918,679 + Synpcc7942_0910 0.28 -1.4 918,688 + Synpcc7942_0910 0.30 +1.3 918,689 + Synpcc7942_0910 0.30 -4.9 918,742 + Synpcc7942_0910 0.42 -0.9 918,769 + Synpcc7942_0910 0.49 -1.5 918,781 + Synpcc7942_0910 0.52 -2.6 918,782 - Synpcc7942_0910 0.52 +1.8 918,796 + Synpcc7942_0910 0.55 -0.5 918,829 + Synpcc7942_0910 0.63 -1.0 918,829 + Synpcc7942_0910 0.63 -0.0 918,829 + Synpcc7942_0910 0.63 -3.4 918,829 + Synpcc7942_0910 0.63 -0.5 918,829 + Synpcc7942_0910 0.63 -2.3 918,837 - Synpcc7942_0910 0.65 -0.0 918,837 - Synpcc7942_0910 0.65 -0.7 918,837 - Synpcc7942_0910 0.65 -0.2 918,847 + Synpcc7942_0910 0.67 +0.7 918,863 - Synpcc7942_0910 0.71 -1.5 918,882 + Synpcc7942_0910 0.75 -1.1 918,882 + Synpcc7942_0910 0.75 -1.2 918,882 + +1.0 918,882 + Synpcc7942_0910 0.75 +1.5 918,882 + Synpcc7942_0910 0.75 +0.1 918,894 + Synpcc7942_0910 0.78 -2.3 918,902 - Synpcc7942_0910 0.80 -2.6 918,902 - Synpcc7942_0910 0.80 -0.3 918,923 + Synpcc7942_0910 0.85 +1.5 918,931 + Synpcc7942_0910 0.86 -1.2 918,931 - Synpcc7942_0910 0.86 +1.1 918,951 + -4.2 918,953 - +0.3 918,958 - +0.0 918,967 + +1.4 918,975 - -0.8 918,983 + +0.4 918,983 + +0.8 918,983 + -3.1 918,995 - +0.8 919,013 - -1.6 919,050 + Synpcc7942_0911 0.21 -1.3 919,067 - -0.3 919,088 + Synpcc7942_0911 0.36 -0.0 919,088 + Synpcc7942_0911 0.36 -0.0 919,094 - -1.3 919,096 - Synpcc7942_0911 0.39 -2.2 919,096 - Synpcc7942_0911 0.39 -0.3 919,120 - Synpcc7942_0911 0.48 +1.3 919,127 - Synpcc7942_0911 0.51 -1.2 919,164 + Synpcc7942_0911 0.66 -0.5 919,172 - Synpcc7942_0911 0.69 +0.0 919,172 - Synpcc7942_0911 0.69 -1.7 919,172 - Synpcc7942_0911 0.69 +0.1 919,174 + Synpcc7942_0911 0.70 -0.4 919,190 + Synpcc7942_0911 0.76 -1.0 919,193 - Synpcc7942_0911 0.77 +1.1 919,193 - +0.8 919,193 - Synpcc7942_0911 0.77 +0.4 919,198 - Synpcc7942_0911 0.79 +1.0 919,198 - Synpcc7942_0911 0.79 +0.4 919,200 - Synpcc7942_0911 0.80 -2.3 919,207 + Synpcc7942_0911 0.83 +1.4 919,209 - Synpcc7942_0911 0.84 +1.7 919,244 + -0.3 919,252 - -1.5 919,271 - +2.6 919,282 + -1.0 919,295 - +2.2 919,322 - -0.6
Or see this region's nucleotide sequence