Experiment: Flask grown at 18C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0824 and Synpcc7942_0825 are separated by 60 nucleotides Synpcc7942_0825 and Synpcc7942_0826 are separated by 38 nucleotides Synpcc7942_0826 and cobW are separated by 128 nucleotides
Synpcc7942_0824: Synpcc7942_0824 - hypothetical protein, at 818,189 to 819,895
_0824
Synpcc7942_0825: Synpcc7942_0825 - hypothetical protein, at 819,956 to 820,654
_0825
Synpcc7942_0826: Synpcc7942_0826 - hypothetical protein, at 820,693 to 821,628
_0826
Synpcc7942_0827: cobW - cobalamin synthesis protein cobW-like, at 821,757 to 822,803
cobW
Position (kb) 820
821
822 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 819.708 kb on + strand, within Synpcc7942_0824 at 819.761 kb on - strand at 819.792 kb on + strand at 819.800 kb on - strand at 819.818 kb on + strand at 819.818 kb on + strand at 820.229 kb on - strand, within Synpcc7942_0825 at 820.349 kb on + strand, within Synpcc7942_0825 at 820.463 kb on + strand, within Synpcc7942_0825 at 820.623 kb on + strand at 820.623 kb on + strand at 820.647 kb on - strand at 820.671 kb on - strand at 820.701 kb on - strand at 820.731 kb on + strand at 820.748 kb on + strand at 820.752 kb on + strand at 820.797 kb on + strand, within Synpcc7942_0826 at 820.797 kb on + strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.805 kb on - strand, within Synpcc7942_0826 at 820.833 kb on - strand, within Synpcc7942_0826 at 820.859 kb on + strand, within Synpcc7942_0826 at 820.868 kb on - strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826 at 820.883 kb on + strand, within Synpcc7942_0826 at 820.900 kb on + strand, within Synpcc7942_0826 at 820.908 kb on + strand, within Synpcc7942_0826 at 820.922 kb on + strand, within Synpcc7942_0826 at 820.933 kb on + strand, within Synpcc7942_0826 at 820.943 kb on - strand, within Synpcc7942_0826 at 820.959 kb on - strand, within Synpcc7942_0826 at 820.961 kb on + strand, within Synpcc7942_0826 at 820.978 kb on + strand, within Synpcc7942_0826 at 820.986 kb on - strand, within Synpcc7942_0826 at 820.986 kb on - strand, within Synpcc7942_0826 at 820.988 kb on + strand, within Synpcc7942_0826 at 820.990 kb on - strand, within Synpcc7942_0826 at 820.996 kb on - strand, within Synpcc7942_0826 at 821.038 kb on + strand, within Synpcc7942_0826 at 821.307 kb on + strand, within Synpcc7942_0826 at 821.315 kb on - strand, within Synpcc7942_0826 at 821.451 kb on + strand, within Synpcc7942_0826 at 821.456 kb on + strand, within Synpcc7942_0826 at 821.457 kb on + strand, within Synpcc7942_0826 at 821.457 kb on + strand, within Synpcc7942_0826 at 821.461 kb on + strand, within Synpcc7942_0826 at 821.464 kb on - strand, within Synpcc7942_0826 at 821.465 kb on - strand, within Synpcc7942_0826 at 821.631 kb on - strand at 821.665 kb on - strand at 821.667 kb on + strand at 821.715 kb on + strand at 821.770 kb on + strand at 821.788 kb on - strand at 821.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask grown at 18C remove 819,708 + Synpcc7942_0824 0.89 -3.3 819,761 - -0.9 819,792 + -0.4 819,800 - -1.6 819,818 + +0.3 819,818 + +0.5 820,229 - Synpcc7942_0825 0.39 -4.3 820,349 + Synpcc7942_0825 0.56 -1.9 820,463 + Synpcc7942_0825 0.73 -3.0 820,623 + -4.2 820,623 + -1.4 820,647 - -0.4 820,671 - -1.4 820,701 - -2.1 820,731 + +0.1 820,748 + -0.7 820,752 + +0.8 820,797 + Synpcc7942_0826 0.11 +0.3 820,797 + Synpcc7942_0826 0.11 -2.8 820,805 - Synpcc7942_0826 0.12 -1.5 820,805 - Synpcc7942_0826 0.12 -2.3 820,805 - Synpcc7942_0826 0.12 -0.9 820,833 - Synpcc7942_0826 0.15 -0.6 820,859 + Synpcc7942_0826 0.18 -2.3 820,868 - Synpcc7942_0826 0.19 -3.7 820,883 + Synpcc7942_0826 0.20 -1.6 820,883 + Synpcc7942_0826 0.20 -4.9 820,900 + Synpcc7942_0826 0.22 -2.3 820,908 + Synpcc7942_0826 0.23 -1.7 820,922 + Synpcc7942_0826 0.24 -0.7 820,933 + Synpcc7942_0826 0.26 -4.0 820,943 - Synpcc7942_0826 0.27 -0.9 820,959 - Synpcc7942_0826 0.28 -1.3 820,961 + Synpcc7942_0826 0.29 -2.5 820,978 + Synpcc7942_0826 0.30 -0.9 820,986 - Synpcc7942_0826 0.31 -0.6 820,986 - Synpcc7942_0826 0.31 -1.0 820,988 + Synpcc7942_0826 0.32 -1.8 820,990 - Synpcc7942_0826 0.32 -1.7 820,996 - Synpcc7942_0826 0.32 -0.8 821,038 + Synpcc7942_0826 0.37 -2.2 821,307 + Synpcc7942_0826 0.66 -0.2 821,315 - Synpcc7942_0826 0.66 -1.2 821,451 + Synpcc7942_0826 0.81 -1.1 821,456 + Synpcc7942_0826 0.82 -1.0 821,457 + Synpcc7942_0826 0.82 -0.5 821,457 + Synpcc7942_0826 0.82 -0.4 821,461 + Synpcc7942_0826 0.82 -1.6 821,464 - Synpcc7942_0826 0.82 -5.2 821,465 - Synpcc7942_0826 0.82 -1.4 821,631 - -0.3 821,665 - +2.8 821,667 + -2.4 821,715 + +1.6 821,770 + -2.5 821,788 - -2.2 821,815 - -2.0
Or see this region's nucleotide sequence