Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0802

Experiment: Flask grown at 18C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcpcT and sodB are separated by 74 nucleotidessodB and Synpcc7942_0802 are separated by 104 nucleotidesSynpcc7942_0802 and Synpcc7942_0803 are separated by 2 nucleotidesSynpcc7942_0803 and pdxA overlap by 2 nucleotides Synpcc7942_0800: cpcT - hypothetical protein, at 794,455 to 795,048 cpcT Synpcc7942_0801: sodB - Superoxide dismutase, at 795,123 to 795,812 sodB Synpcc7942_0802: Synpcc7942_0802 - allophycocyanin alpha chain-like, at 795,917 to 796,504 _0802 Synpcc7942_0803: Synpcc7942_0803 - hypothetical protein, at 796,507 to 797,289 _0803 Synpcc7942_0804: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase, at 797,288 to 798,349 pdxA Position (kb) 795 796 797Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 794.977 kb on + strand, within cpcTat 795.043 kb on + strandat 795.047 kb on + strandat 795.051 kb on - strandat 795.057 kb on + strandat 795.060 kb on - strandat 795.066 kb on - strandat 795.080 kb on + strandat 795.088 kb on - strandat 795.112 kb on - strandat 795.121 kb on - strandat 795.126 kb on - strandat 795.132 kb on + strandat 795.142 kb on + strandat 795.145 kb on - strandat 795.150 kb on - strandat 795.163 kb on + strandat 795.196 kb on - strand, within sodBat 795.788 kb on + strandat 795.808 kb on + strandat 795.825 kb on - strandat 795.830 kb on - strandat 795.840 kb on - strandat 795.846 kb on + strandat 795.887 kb on - strandat 795.887 kb on - strandat 795.944 kb on + strandat 795.952 kb on - strandat 795.980 kb on + strand, within Synpcc7942_0802at 796.014 kb on - strand, within Synpcc7942_0802at 796.015 kb on + strand, within Synpcc7942_0802at 796.087 kb on + strand, within Synpcc7942_0802at 796.087 kb on + strand, within Synpcc7942_0802at 796.095 kb on - strand, within Synpcc7942_0802at 796.163 kb on - strand, within Synpcc7942_0802at 796.195 kb on + strand, within Synpcc7942_0802at 796.195 kb on + strand, within Synpcc7942_0802at 796.195 kb on + strand, within Synpcc7942_0802at 796.204 kb on + strand, within Synpcc7942_0802at 796.204 kb on + strand, within Synpcc7942_0802at 796.204 kb on + strand, within Synpcc7942_0802at 796.207 kb on + strand, within Synpcc7942_0802at 796.212 kb on - strand, within Synpcc7942_0802at 796.212 kb on - strand, within Synpcc7942_0802at 796.212 kb on - strand, within Synpcc7942_0802at 796.212 kb on - strand, within Synpcc7942_0802at 796.212 kb on - strand, within Synpcc7942_0802at 796.212 kb on - strand, within Synpcc7942_0802at 796.242 kb on + strand, within Synpcc7942_0802at 796.263 kb on + strand, within Synpcc7942_0802at 796.283 kb on - strand, within Synpcc7942_0802at 796.300 kb on + strand, within Synpcc7942_0802at 796.308 kb on - strand, within Synpcc7942_0802at 796.323 kb on - strand, within Synpcc7942_0802at 796.343 kb on + strand, within Synpcc7942_0802at 796.343 kb on + strand, within Synpcc7942_0802at 796.387 kb on - strand, within Synpcc7942_0802at 796.444 kb on - strand, within Synpcc7942_0802at 796.444 kb on - strand, within Synpcc7942_0802at 796.446 kb on + strandat 796.465 kb on - strandat 796.478 kb on + strandat 796.486 kb on - strandat 796.488 kb on + strandat 796.488 kb on + strandat 796.488 kb on + strandat 796.488 kb on + strandat 796.488 kb on + strandat 796.488 kb on + strandat 796.496 kb on - strandat 796.496 kb on - strandat 796.496 kb on - strandat 796.496 kb on - strandat 796.496 kb on - strandat 796.496 kb on - strandat 796.496 kb on - strandat 796.511 kb on - strandat 796.522 kb on + strandat 796.523 kb on + strandat 796.523 kb on + strandat 796.525 kb on + strandat 796.525 kb on - strandat 796.529 kb on - strandat 796.531 kb on - strandat 796.562 kb on + strandat 796.582 kb on + strandat 796.585 kb on - strandat 796.683 kb on - strand, within Synpcc7942_0803at 796.727 kb on + strand, within Synpcc7942_0803at 796.741 kb on + strand, within Synpcc7942_0803at 796.784 kb on - strand, within Synpcc7942_0803at 796.784 kb on - strandat 796.794 kb on - strand, within Synpcc7942_0803at 796.810 kb on + strand, within Synpcc7942_0803at 796.821 kb on - strand, within Synpcc7942_0803at 796.835 kb on - strand, within Synpcc7942_0803at 796.836 kb on - strand, within Synpcc7942_0803at 796.837 kb on - strand, within Synpcc7942_0803at 796.876 kb on + strand, within Synpcc7942_0803at 796.890 kb on - strand, within Synpcc7942_0803at 796.901 kb on + strand, within Synpcc7942_0803at 796.918 kb on - strand, within Synpcc7942_0803at 796.949 kb on - strand, within Synpcc7942_0803at 796.982 kb on + strand, within Synpcc7942_0803at 796.982 kb on + strand, within Synpcc7942_0803at 796.982 kb on + strand, within Synpcc7942_0803at 796.982 kb on + strand, within Synpcc7942_0803at 796.982 kb on + strand, within Synpcc7942_0803at 796.990 kb on - strand, within Synpcc7942_0803at 796.990 kb on - strand, within Synpcc7942_0803at 796.990 kb on - strand, within Synpcc7942_0803at 796.990 kb on - strand, within Synpcc7942_0803at 796.990 kb on - strand, within Synpcc7942_0803at 797.007 kb on - strand, within Synpcc7942_0803at 797.019 kb on - strand, within Synpcc7942_0803at 797.019 kb on - strand, within Synpcc7942_0803at 797.045 kb on + strand, within Synpcc7942_0803at 797.053 kb on + strand, within Synpcc7942_0803at 797.053 kb on - strand, within Synpcc7942_0803at 797.077 kb on - strand, within Synpcc7942_0803at 797.097 kb on - strand, within Synpcc7942_0803at 797.105 kb on + strand, within Synpcc7942_0803at 797.111 kb on - strand, within Synpcc7942_0803at 797.114 kb on - strand, within Synpcc7942_0803at 797.117 kb on + strand, within Synpcc7942_0803at 797.119 kb on - strand, within Synpcc7942_0803at 797.123 kb on + strand, within Synpcc7942_0803at 797.158 kb on - strand, within Synpcc7942_0803at 797.163 kb on + strand, within Synpcc7942_0803at 797.252 kb on + strandat 797.252 kb on + strandat 797.260 kb on - strandat 797.260 kb on - strandat 797.260 kb on - strandat 797.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask grown at 18C
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794,977 + cpcT Synpcc7942_0800 0.88 +0.6
795,043 + +1.8
795,047 + -1.2
795,051 - -1.0
795,057 + +1.7
795,060 - -0.2
795,066 - +2.0
795,080 + +3.7
795,088 - -1.5
795,112 - -1.5
795,121 - -0.8
795,126 - +0.6
795,132 + +0.5
795,142 + +1.1
795,145 - +3.7
795,150 - -1.2
795,163 + +2.3
795,196 - sodB Synpcc7942_0801 0.11 -0.1
795,788 + +2.4
795,808 + +2.9
795,825 - +4.2
795,830 - -1.0
795,840 - +4.5
795,846 + +5.1
795,887 - -0.8
795,887 - +1.0
795,944 + +1.4
795,952 - -1.4
795,980 + Synpcc7942_0802 0.11 -0.5
796,014 - Synpcc7942_0802 0.16 +1.9
796,015 + Synpcc7942_0802 0.17 -0.6
796,087 + Synpcc7942_0802 0.29 +3.1
796,087 + Synpcc7942_0802 0.29 +4.0
796,095 - Synpcc7942_0802 0.30 +3.6
796,163 - Synpcc7942_0802 0.42 -0.2
796,195 + Synpcc7942_0802 0.47 +4.9
796,195 + Synpcc7942_0802 0.47 +1.0
796,195 + Synpcc7942_0802 0.47 +0.8
796,204 + Synpcc7942_0802 0.49 +2.1
796,204 + Synpcc7942_0802 0.49 +2.8
796,204 + Synpcc7942_0802 0.49 +2.6
796,207 + Synpcc7942_0802 0.49 -0.3
796,212 - Synpcc7942_0802 0.50 +2.6
796,212 - Synpcc7942_0802 0.50 +0.2
796,212 - Synpcc7942_0802 0.50 +2.0
796,212 - Synpcc7942_0802 0.50 -0.4
796,212 - Synpcc7942_0802 0.50 -1.3
796,212 - Synpcc7942_0802 0.50 +2.6
796,242 + Synpcc7942_0802 0.55 +4.7
796,263 + Synpcc7942_0802 0.59 +0.2
796,283 - Synpcc7942_0802 0.62 +2.9
796,300 + Synpcc7942_0802 0.65 -0.6
796,308 - Synpcc7942_0802 0.66 +2.3
796,323 - Synpcc7942_0802 0.69 +0.5
796,343 + Synpcc7942_0802 0.72 +1.3
796,343 + Synpcc7942_0802 0.72 +2.2
796,387 - Synpcc7942_0802 0.80 +4.7
796,444 - Synpcc7942_0802 0.90 +1.2
796,444 - Synpcc7942_0802 0.90 -0.4
796,446 + +0.6
796,465 - -1.2
796,478 + +2.4
796,486 - +0.7
796,488 + +2.9
796,488 + -0.2
796,488 + -2.4
796,488 + -1.4
796,488 + +2.9
796,488 + -0.3
796,496 - -1.3
796,496 - +2.7
796,496 - -1.0
796,496 - +2.9
796,496 - -1.2
796,496 - +0.6
796,496 - +0.5
796,511 - -0.4
796,522 + -2.0
796,523 + -0.5
796,523 + +2.6
796,525 + -0.6
796,525 - +2.6
796,529 - -1.8
796,531 - -1.0
796,562 + -0.2
796,582 + -0.0
796,585 - +0.8
796,683 - Synpcc7942_0803 0.22 -1.2
796,727 + Synpcc7942_0803 0.28 -1.4
796,741 + Synpcc7942_0803 0.30 +3.6
796,784 - Synpcc7942_0803 0.35 -0.1
796,784 - -1.1
796,794 - Synpcc7942_0803 0.37 -1.5
796,810 + Synpcc7942_0803 0.39 -0.0
796,821 - Synpcc7942_0803 0.40 -0.4
796,835 - Synpcc7942_0803 0.42 -0.4
796,836 - Synpcc7942_0803 0.42 -2.1
796,837 - Synpcc7942_0803 0.42 -0.6
796,876 + Synpcc7942_0803 0.47 +1.0
796,890 - Synpcc7942_0803 0.49 -0.9
796,901 + Synpcc7942_0803 0.50 -2.1
796,918 - Synpcc7942_0803 0.52 -1.4
796,949 - Synpcc7942_0803 0.56 -1.4
796,982 + Synpcc7942_0803 0.61 +0.8
796,982 + Synpcc7942_0803 0.61 +1.0
796,982 + Synpcc7942_0803 0.61 -0.2
796,982 + Synpcc7942_0803 0.61 -3.0
796,982 + Synpcc7942_0803 0.61 -0.0
796,990 - Synpcc7942_0803 0.62 -0.0
796,990 - Synpcc7942_0803 0.62 -2.7
796,990 - Synpcc7942_0803 0.62 +0.7
796,990 - Synpcc7942_0803 0.62 -0.2
796,990 - Synpcc7942_0803 0.62 +2.2
797,007 - Synpcc7942_0803 0.64 -0.4
797,019 - Synpcc7942_0803 0.65 +0.1
797,019 - Synpcc7942_0803 0.65 -1.0
797,045 + Synpcc7942_0803 0.69 -2.0
797,053 + Synpcc7942_0803 0.70 -1.0
797,053 - Synpcc7942_0803 0.70 +0.3
797,077 - Synpcc7942_0803 0.73 +1.4
797,097 - Synpcc7942_0803 0.75 +0.3
797,105 + Synpcc7942_0803 0.76 +1.7
797,111 - Synpcc7942_0803 0.77 +0.2
797,114 - Synpcc7942_0803 0.78 +2.5
797,117 + Synpcc7942_0803 0.78 +1.4
797,119 - Synpcc7942_0803 0.78 -0.9
797,123 + Synpcc7942_0803 0.79 -0.9
797,158 - Synpcc7942_0803 0.83 +0.7
797,163 + Synpcc7942_0803 0.84 -0.6
797,252 + +0.3
797,252 + +2.7
797,260 - -1.4
797,260 - -0.3
797,260 - +0.2
797,318 - -0.6

Or see this region's nucleotide sequence